Job Description P0A8L1 Confidence 100.00% Date Thu Jan 5 11:08:05 GMT 2012 Rank 23 Aligned Residues 257 % Identity 18% Template c1nj2A_ PDB info PDB header:ligase Chain: A: PDB Molecule:proline-trna synthetase; PDBTitle: crystal structure of prolyl-trna synthetase from methanothermobacter2 thermautotrophicus Resolution 3.11 Å

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		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	G	E	M	H	S	G	L	D	F	A	A	A	V	K	L	T	G	S	R	F	V	V	M	K	G	Q	I	A	R	M	H	R	A	L	S	Q	F	M	L	D	L	H	T	E	Q	H	G	Y	S	E	N	Y	V	P	Y	L	V	N	Q	D	T	L	Y	G	T	G	Q	L	P	K	F	A	G	D	L	F	H	T
Query Conservation
Alig confidence																	.	.	.	.																										.	.
Template Conservation																	.	.	.	.																										.	.
Template Sequence		N	I	L	E	E	A	E	I	I	D	Q	R	Y	P	V	.	.	.	.	K	G	M	H	V	W	M	P	H	G	F	M	I	R	K	N	T	L	K	I	L	R	R	I	L	.	.	D	R	D	H	E	E	V	L	F	P	L	L	V	P	E	D	E	L	A	E	V	Y	W	V	T	H	G	G	L	S	K	L	Q	R
Template Known Secondary structure							T	T							S	S	.	.	.	.	T	T																								.	.	T	T	T								S																S	S	S	S
Template Predicted Secondary structure																	.	.	.	.																										.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40					.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.			.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.		.	.	.	.	.
Predicted Secondary structure																																																																							.					.
Query SS confidence																																																																							.					.
Query Sequence		R	P	L	E	E	E	A	D	T	S	N	Y	A	L	I	P	T	A	E	V	P	L	T	N	L	V	R	G	E	I	I	D	E	D	D	L	P	I	K	M	T	A	H	T	P	C	F	R	S	E	A	G	S	Y	G	R	D	T	R	G	L	I	R	M	H	Q	F	D	K	.	V	E	M	V	.	Q	I	V	R	P
Query Conservation																																																																							.					.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																										.	.	.	.															.					.
Template Conservation		.	.	.	.	.	.	.	.	.	.																																										.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	K	L	A	L	R	P	T	S	E	T	V	M	Y	P	M	F	A	L	W	V	R	S	H	T	D	L	P	M	R	F	Y	Q	V	V	N	T	F	R	Y	E	T	.	.	.	.	K	H	T	R	P	L	I	R	V	R	E	I	T	T	F	K	E	A	H	T	I	H	A	T	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.						S		T														S	T	T	T																	.	.	.	.	S			B	T	T	T	B		S													S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																										.	.	.	.
Template SS confidence
												111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.					.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	S	M	A	A	L	E	E	M	T	G	H	A	E	K	V	L	Q	L	L	G	L	P	Y	R	K	I	I	L	C	T	G	D	M	G	F	G	A	C	K	T	Y	D	L	E	V	W	I	P	A	Q	N	T	Y	R	E	I	S	S	C	S	N	V	W	D	F	Q	A	R	R	M	Q	A	R	C	R	S	K	S
Query Conservation
Alig confidence																																																				.
Template Conservation																																																				.
Template Sequence		S	E	A	E	E	Q	V	E	R	A	V	E	I	Y	K	E	F	F	N	S	L	G	I	P	Y	L	I	T	R	R	P	P	W	D	K	F	P	G	S	E	Y	T	V	A	F	D	T	L	M	P	.	D	G	K	T	L	Q	I	G	T	V	H	N	L	G	Q	T	F	A	R	T	F	E	I	K	F	E	T	P	E
Template Known Secondary structure																							T							B			T	T	T	S		T	T		S										T	.	T	S													S							T						T	T
Template Predicted Secondary structure																																																				.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	K	T	R	L	V	H	T	L	N	G	S	G	L	A	V	G	R	T	L	V	A	V	M	E	N	Y	Q	Q	A	D	G	R	I	E	V	P	E	V	L	R	P	Y
Query Conservation
Alig confidence																.	.	.																	.
Template Conservation																.	.	.																	.
Template Sequence		G	D	H	E	Y	V	H	Q	T	C	Y	G	L	S	.	.	.	D	R	V	I	A	S	V	I	A	I	H	G	D	E	S	G	.	L	C	L	P	P	D	V	A	A	H
Template Known Secondary structure		S														.	.	.	T										T			S	S	S	.					T	T	T	S	S
Template Predicted Secondary structure																.	.	.																	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.				270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions