Job Description P0A8L1 Confidence 100.00% Date Thu Jan 5 11:08:05 GMT 2012 Rank 30 Aligned Residues 261 % Identity 15% Template c1g5hA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:mitochondrial dna polymerase accessory subunit; PDBTitle: crystal structure of the accessory subunit of murine mitochondrial2 polymerase gamma Resolution 1.95 Å

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		140	.	.	.	.	.	.	.	.	.						150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure												.	.	.	.	.
Query SS confidence												.	.	.	.	.
Query Sequence		V	T	L	G	E	M	H	S	G	L	.	.	.	.	.	D	F	A	A	A	V	K	L	T	G	S	R	F	V	V	M	K	G	Q	I	A	R	M	H	R	A	L	S	Q	F	M	L	D	L	H	T	E	Q	H	G	Y	S	E	N	Y	V	P	Y	L	V	N	Q	D	T	L	Y	G	T	G	Q	L	P	K	F	A
Query Conservation												.	.	.	.	.
Alig confidence												.	.	.	.	.											.																										.	.
Template Conservation																											.																										.	.
Template Sequence		V	D	L	C	R	R	R	H	F	L	S	G	T	P	Q	Q	L	S	T	A	A	L	L	S	G	.	C	H	A	R	F	G	P	L	G	V	E	L	R	K	N	L	A	S	Q	W	W	S	S	X	V	.	.	V	F	R	E	Q	V	F	A	V	D	S	L	H	Q	E	P	G	S	S	Q	P	R	D	S	A	F	R
Template Known Secondary structure								T	T	S	B				G	G	G	G	S								.		S			B																				T	.	.	T	T		T	T								S							S	S						B
Template Predicted Secondary structure																											.																										.	.
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.			.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		215																		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Query Sequence		G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	F	H	T	R	P	L	E	E	E	A	D	T	S	N	Y	A	L	I	P	T	A	E	V	P	L	T	N	L	V	R	G	E	I	.	I	D	E	D	D	L	P	I	K	M	T	A	H	T	P	C	F	R	S	E	A	G	S	Y	G	R
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.																				.																					.	.	.	.	.	.
Template Conservation																															.	.	.	.	.																																									.	.	.	.	.	.
Template Sequence		L	V	S	P	E	S	I	R	E	I	L	Q	D	S	K	E	Q	L	V	A	F	L	E	N	L	L	K	T	S	.	.	.	.	.	G	K	L	R	A	T	L	L	H	G	A	L	E	H	Y	V	N	C	L	D	L	V	N	R	K	L	P	F	G	L	A	Q	I	G	V	C	F	H	P	V	.	.	.	.	.	.
Template Known Secondary structure																														S	.	.	.	.	.					S		S							T								T	T	T	B	S															.	.	.	.	.	.
Template Predicted Secondary structure																															.	.	.	.	.																																									.	.	.	.	.	.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.						150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	R	G	L	I	R	M	H	Q	F	D	K	V	E	M	V	Q	I	V	R	P	E	D	S	M	A	A	L	E	E	M	T	G	H	A	E	K	V	L	Q	L	L	G	L	P	Y	R	K	I	I	L	C	T	G	D	M	G	F	G	A	C	K	T	Y	D	L	E	V	W	I	P	A	Q	N	T	Y	R	E	I
Query Conservation
Alig confidence		.	.	.	.																																																			.																			.	.
Template Conservation		.	.	.	.																																																			.																			.	.
Template Sequence		.	.	.	.	S	T	R	V	G	E	K	T	E	A	S	L	V	W	F	T	P	T	R	T	S	S	Q	W	L	D	F	W	L	R	H	R	L	L	W	W	R	K	F	A	X	S	P	S	N	F	S	S	A	D	.	C	Q	D	E	L	G	R	K	G	S	K	L	Y	Y	S	F	P	W	.	.	G	K	E	P	I
Template Known Secondary structure		.	.	.	.																																						T	T		S	S	G	G	G						.				T	T	S											T	T	.	.
Template Predicted Secondary structure		.	.	.	.																																																			.																			.	.
Template SS confidence
						193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260			.	.	.	.	.
		357	.	.	360	.	.	.	.	.	.					.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure												.	.	.	.
Query SS confidence												.	.	.	.
Query Sequence		S	S	C	S	N	V	W	D	F	Q	.	.	.	.	A	R	R	M	Q	A	R	C	R	S	K	S	D	K	K	T	R	L	V	H	T	L	N	G	S	G	L	A	V	G	R	T	L	V	A	V	M	E	N	Y	Q	Q	A	D	G	R	I	E	V	P	E	V	L	R	P	Y
Query Conservation												.	.	.	.
Alig confidence												.	.	.	.																																														.
Template Conservation																																																													.
Template Sequence		E	T	L	W	N	L	G	D	Q	E	L	L	H	T	Y	P	G	N	V	S	T	I	Q	G	R	D	G	R	K	N	V	V	P	C	V	L	S	V	S	G	D	V	D	L	G	T	L	A	Y	L	Y	D	S	F	Q	L	R	K	V	.	L	K	L	H	P	C	L	A	P	I
Template Known Secondary structure									S							S	T	T		G	G	G	S					T	T																																.					T	T	T		S
Template Predicted Secondary structure																																																													.
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.		.	.	.	.	.	.	340	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions