Job Description P37906 Confidence 100.00% Date Thu Jan 5 11:57:45 GMT 2012 Rank 3 Aligned Residues 375 % Identity 18% Template c3ps9A_ PDB info PDB header:transferase Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis PDBTitle: crystal structure of mnmc from e. coli Resolution 2.54 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		S	A	N	K	Y	A	P	F	D	T	L	N	E	S	I	T	C	D	V	C	V	V	G	G	G	Y	T	G	L	S	S	A	L	H	L	A	E	A	G	F	D	V	V	V	L	E	A	S	R	.	I	G	F	G	A	S	G	R	N	G	G	Q	L	V	N	S	Y	S	R	D	I	D	V	I	E	K	S	Y	G	M
Query Conservation																																																			.
Alig confidence																																																			.																								.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		P	L	P	C	S	A	P	W	F	N	R	T	G	S	S	K	R	E	A	A	I	I	G	G	G	I	A	S	A	L	L	S	L	A	L	L	R	R	G	W	Q	V	T	L	Y	C	A	D	E	A	P	A	L	G	A	S	G	N	R	Q	G	A	L	Y	P	L	L	S	K	H	D	E	A	.	.	.	.	.	.	.
Template Known Secondary structure						S		G	G	G						S										S												T	T	T								S	S	S	S	S	S		S	T	T			S										S	S				.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	A	R	M	L	G	S	M	M	F	E	G	G	E	I	I	R	E	R	I	K	R	Y	Q	I	D	C	D	Y	R	P	G	G	L	F	V	A	M	N	D	K	Q	L	A	T	L	E	E	Q	K	E	N	W	E	R	Y	G	N	K	Q	L	E	L	L	D	A	N	A	I	R	R	E	V	A	S	D	R	Y	T
Query Conservation
Alig confidence		.	.	.	.	.																																																.
Template Conservation		.	.	.	.	.																																																.
Template Sequence		.	.	.	.	.	L	N	R	F	F	S	N	A	F	T	F	A	R	R	F	Y	D	Q	L	P	V	K	F	D	H	D	W	C	G	V	T	Q	L	G	W	D	E	K	S	Q	H	K	I	A	Q	M	L	.	S	M	D	L	P	A	E	L	A	V	A	V	E	A	N	A	V	E	Q	I	T	G	V	A	T	N	C
Template Known Secondary structure		.	.	.	.	.																					S															S												.	T	S				T	T	T														S	S			S	S
Template Predicted Secondary structure		.	.	.	.	.																																																.
Template SS confidence
							322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.		.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220			.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.
Query SS confidence																																																				.	.
Query Sequence		G	A	L	L	D	H	S	G	G	H	I	H	P	L	N	L	A	I	G	E	A	D	A	I	R	L	N	G	G	R	V	Y	E	L	S	A	V	T	Q	I	Q	H	T	T	P	A	V	V	R	T	.	.	A	K	G	Q	V	T	A	K	Y	V	I	V	A	G	N	A	Y	L	G	D	K	V	E	P	E	L	A	K
Query Conservation																																																				.	.
Alig confidence																																																				.	.																										.
Template Conservation																																																																															.
Template Sequence		S	G	I	T	Y	P	Q	G	G	W	L	C	P	A	E	L	T	R	N	V	L	E	L	A	Q	Q	Q	G	L	Q	I	Y	Y	Q	Y	Q	L	Q	N	F	S	R	K	D	D	C	W	L	L	N	F	A	G	D	Q	Q	A	T	H	S	V	V	V	L	A	N	G	H	Q	I	S	R	F	S	Q	T	S	.	T	L
Template Known Secondary structure							T	T																				T	T						S										T	T							T	T	S						S							G	G	G	G	G		S	T	T	T	T	.	T
Template Predicted Secondary structure																																																																															.
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.		.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.				310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.
Query SS confidence																																																															.	.	.
Query Sequence		R	S	M	P	C	G	T	Q	V	I	T	T	E	R	L	S	E	D	L	A	R	S	L	I	P	K	N	Y	C	V	E	D	C	N	Y	L	L	D	Y	Y	R	L	T	A	D	N	R	L	L	Y	G	G	G	V	V	Y	G	A	R	D	P	.	.	.	D	D	V	E	R	L	V	V	P	K	L	L	K	T	F	P
Query Conservation																																																															.	.	.
Alig confidence																						.	.	.	.	.	.	.																																			.	.	.
Template Conservation																						.	.	.	.	.	.	.
Template Sequence		P	V	Y	S	V	A	G	Q	V	S	H	I	P	T	T	P	E	L	A	E	.	.	.	.	.	.	.	L	K	Q	V	L	C	Y	D	G	Y	L	T	P	Q	N	P	A	N	Q	H	H	C	I	G	A	S	Y	H	R	G	S	E	D	T	A	Y	S	E	D	D	Q	Q	Q	N	R	Q	R	L	I	D	C	F	P
Template Known Secondary structure		S															T	T	G	G	G	.	.	.	.	.	.	.			S				S	S	S						B	T	T	T	T											T																						S	T
Template Predicted Secondary structure																						.	.	.	.	.	.	.
Template SS confidence
		475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.								.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.
		326	.	.						.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.																										.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	L	K	.	.	.	.	.	G	V	K	I	D	Y	R	W	T	G	N	F	L	L	T	L	S	R	M	P	Q	F	G	R	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	N	I	Y	Y	M	Q	G	Y	S	G	H	G	V	T	C	T	H	L	A	G
Query Conservation					.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	A	Q	W	A	K	E	V	D	V	S	D	K	E	A	R	C	G	V	R	C	A	T	R	D	H	L	P	M	V	G	N	V	P	D	Y	E	A	T	L	V	E	Y	A	S	L	A	E	Q	K	D	E	A	V	S	A	P	V	F	D	D	L	F	M	F	A	A	L	G	S	R	G	L	C	S	A	P	L	C	A
Template Known Secondary structure		T						T				T	T												T	T																		T	T	T	T	T	S			T	T			S														T	T
Template Predicted Secondary structure
Template SS confidence
		548	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390			.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.
Query SS confidence																	.	.
Query Sequence		R	L	I	A	E	L	L	R	G	D	A	E	R	F	D	.	.	A	F	A	N	L	P	H	Y	P	F	P	G	G	R	T	L	R
Query Conservation																	.	.
Alig confidence																	.	.
Template Conservation
Template Sequence		E	I	L	A	A	Q	M	S	D	E	P	I	P	M	D	A	S	T	L	A	A	L	N	P	N	R	L	W	V	R	K	L	L	K
Template Known Secondary structure									T	T				S	S	B						T	T		T	T									T
Template Predicted Secondary structure
Template SS confidence
		628	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.