Job Description P37906 Confidence 99.43% Date Thu Jan 5 11:57:45 GMT 2012 Rank 66 Aligned Residues 337 % Identity 13% Template c3nrnA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pf1083; PDBTitle: crystal structure of pf1083 protein from pyrococcus furiosus,2 northeast structural genomics consortium target pfr223 Resolution 2.10 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.			.	.	.	.	.	70	.	.										.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																																					.	.									.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Query SS confidence																																					.	.									.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Query Sequence		V	C	V	V	G	G	G	Y	T	G	L	S	S	A	L	H	L	A	E	A	G	F	D	V	V	V	L	E	A	S	R	I	G	F	G	.	.	A	S	G	R	N	G	G	Q	.	.	.	.	.	.	.	.	.	L	V	N	S	Y	S	R	D	I	D	V	I	E	K	S	Y	G	M	D	.	.	.	.	.	.	.
Query Conservation																																					.	.									.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Alig confidence																																					.	.									.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	V	V	V	G	A	G	L	G	G	L	L	A	G	A	F	L	A	R	N	G	H	E	I	I	V	L	E	K	S	A	X	I	G	G	R	F	T	N	L	P	Y	K	G	F	Q	L	S	T	G	A	L	H	X	I	P	H	G	E	D	G	P	L	A	H	L	L	R	I	L	G	A	K	V	E	I	V	N	S	N
Template Known Secondary structure						S		S													T	T								S	S	S	S	S		T	T	S	S					T	T					S	S	S		S			T	T	T	T	S	S										T									S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
											92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	T	A	R	M	L	G	S	M	M	F	E	G	G	E	I	I	R	E	R	I	K	R	Y	Q	I	D	C	D	Y	R	P	G	G	L	F	V	A	M	N	D	K	Q	L	A	T	L	E	E	Q	K	E	N	W	E	R	Y	G	N	K	Q	L	E	L	L	D	A	N	A	I	R	R
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	K	G	K	I	L	W	E	G	K	I	F	H	Y	R	E	S	W	K	F	L	S	K	L	L	A	E	I	R	X	N	K	L	P	K	E	E	I	P	A	D	E	W	I	K	E	K	I	G	E	N	E	F	L	L	S	V	L	E	S	F	A	G	W	A	D	S	V	S	L	S	D	L	T	A	L	E	L	A	K
Template Known Secondary structure		S	S						T	T					G	G	G	G	G	G	G										T	T							S	B									T																			S	S		G	G	G	S	B
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	A	S	D	R	Y	T	G	A	L	L	D	H	S	G	G	H	I	H	P	L	N	L	A	I	G	E	A	D	A	I	R	L	N	G	G	R	V	Y	E	L	S	A	V	T	Q	I	Q	H	T	T	P	A	V	V	R	T	A	K	G	Q	V	T	A	K	Y	V	I	V	A	G	N	A	Y	L	G	D	K	V
Query Conservation
Alig confidence																.	.	.
Template Conservation																.	.	.
Template Sequence		E	I	R	A	A	L	R	W	G	G	P	G	L	I	.	.	.	R	G	G	C	K	A	V	I	D	E	L	E	R	I	I	X	E	N	K	G	K	I	L	T	R	K	E	V	V	E	I	N	I	E	E	K	K	V	Y	T	R	D	N	E	E	Y	S	F	D	V	A	I	S	N	V	G	V	R	E	T	V	K	L
Template Known Secondary structure											S					.	.	.	T	T															T	T	T					S	S								T	T	T	T					T	T							S						S
Template Predicted Secondary structure																.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.				.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		243	.	.													.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	P	E	.	.	.	.	.	.	.	.	.	.	.	.	L	A	K	R	S	M	P	C	G	T	Q	V	I	T	T	E	R	L	S	E	D	L	A	R	S	L	I	P	K	N	Y	C	V	E	D	C	N	Y	L	L	D	Y	Y	R	L	T	A	D	N	R	L	L	Y	G	G	G	V	V	Y	G	A	R	D	P	D
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	G	R	D	Y	F	D	R	D	Y	L	K	Q	V	D	S	I	E	P	S	E	G	I	K	F	N	L	A	V	P	G	E	P	R	I	G	N	T	I	V	F	T	P	G	L	X	I	N	G	F	N	E	P	S	A	L	D	K	S	L	A	R	E	G	Y	T	L	I	X	A	H	X	A	L	K	N	G	N	V	K
Template Known Secondary structure				G	G	G	S										T															S	S		S	S		S	S					T	T	S	S	S						G	G	G	T		G	G	G	S		T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	E	R	L	V	V	P	K	L	L	K	T	F	P	Q	L	K	G	V	K	I	D	Y	R	W	T	G	N	F	L	L	T	L	S	R	M	P	Q	F	G	R	L	D	T	N	I	Y	Y	M	Q	G	Y	S	G	H	G	V	T	C	T	H	L	A	G
Query Conservation
Alig confidence																	.	.	.																											.	.	.
Template Conservation																	.	.	.																											.	.	.
Template Sequence		K	A	I	E	K	G	W	E	E	L	L	E	I	F	P	.	.	.	E	G	E	P	L	L	A	Q	V	Y	H	I	E	W	P	L	N	E	V	L	V	V	G	D	G	Y	.	.	.	R	P	P	G	G	I	E	V	D	G	I	A	L	G	V	X	K	A
Template Known Secondary structure																T	.	.	.	T																S	S					S	T	T		.	.	.			T	T
Template Predicted Secondary structure																	.	.	.																											.	.	.
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.				.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.				.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions