Job Description P37906 Confidence 99.42% Date Thu Jan 5 11:57:45 GMT 2012 Rank 68 Aligned Residues 339 % Identity 16% Template c3nksA_ PDB info PDB header:oxidoreductase/oxidoreductase inhibitor Chain: A: PDB Molecule:protoporphyrinogen oxidase; PDBTitle: structure of human protoporphyrinogen ix oxidase Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.			.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																								.	.															.	.
Query SS confidence																								.	.															.	.
Query Sequence		D	V	C	V	V	G	G	G	Y	T	G	L	S	S	A	L	H	L	A	E	A	G	.	.	F	D	V	V	V	L	E	A	S	R	I	G	F	G	.	.	A	S	G	R	N	G	G	Q	L	V	N	S	Y	S	R	D	I	D	V	I	E	K	S	Y	G	M	D	T	A	R	M	L	G	S	M	M	F	E	G	G
Query Conservation																								.	.															.	.
Alig confidence																								.	.															.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	V	V	V	L	G	G	G	I	S	G	L	A	A	S	Y	H	L	S	R	A	P	C	P	P	K	V	V	L	V	E	S	S	E	R	L	G	G	W	I	R	S	V	R	G	P	N	G	A	I	F	E	L	G	P	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	R	P	A	G	A	L	G
Template Known Secondary structure									B												T	S	S	S									S	S	S	S	S	B	T	T							T	T	S					S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		B
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.																60	.	.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.																								.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	I	I	R	E	R	I	K	R	Y	Q	I	D	C	D	Y	R	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	L	F	V	A	M	N	D	K	Q	L	A	T	L	E	E	Q	K	E	N	W	E	R	Y	G	N	K	Q	L	E	L	L	D	A	N	A	I	R
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	R	T	L	L	L	V	S	E	L	G	L	D	S	E	V	L	P	V	R	G	D	H	P	A	A	Q	N	R	F	L	Y	V	G	G	A	L	H	A	L	P	T	G	L	R	G	P	S	P	P	F	S	K	P	L	F	W	A	G	L	R	E	L	T	K	P	R	G	K	E	P	D	E	T	V	H	S	F	A	Q
Template Known Secondary structure											T	T		G	G	G						T	T	S											T	T								S	S					T	T	S		S		S	S					T	T	T	T	S					S	S			B
Template Predicted Secondary structure
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		162	.	.	.																																																												.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	E	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	R	Y	T	G	A	L	L	D	H	S	G	G	H	I	H
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		R	R	L	G	P	E	V	A	S	L	A	M	D	S	L	C	R	G	V	F	A	G	N	S	R	E	L	S	I	R	S	C	F	P	S	L	F	Q	A	E	Q	T	H	R	S	I	L	L	G	L	L	L	G	Q	P	D	S	A	L	I	R	Q	A	L	A	E	R	W	S	Q	W	S	L	R	G	G	L	.	.	.
Template Known Secondary structure												T										S	S		T	T	T	B	B																S																						T	T		S					T	T		T	.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220			.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250							.	.	.	.
Predicted Secondary structure																																								.	.																															.	.	.	.	.	.
Query SS confidence																																								.	.																															.	.	.	.	.	.
Query Sequence		P	L	N	L	A	I	G	E	A	D	A	I	R	L	N	G	G	R	V	Y	E	L	S	A	V	T	Q	I	Q	H	T	T	P	A	V	V	R	T	.	.	A	K	G	Q	V	T	A	K	Y	V	I	V	A	G	N	A	Y	L	G	D	K	V	E	P	E	L	A	K	R	S	.	.	.	.	.	.	M	P	C	G
Query Conservation																																								.	.																															.	.	.	.	.	.
Alig confidence		.																																						.	.																															.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	E	M	L	P	Q	A	L	E	T	H	L	T	S	R	G	V	S	V	L	R	G	Q	P	V	C	G	L	S	L	Q	A	E	G	R	W	K	V	S	L	R	D	S	S	L	E	A	D	H	V	I	S	A	I	P	A	S	V	L	S	E	L	L	P	A	E	A	A	P	L	A	R	A	L	S	A	I	T	A	V
Template Known Secondary structure		.	T													T	T						S										G	G	G							S	S						S						S									S		G	G	G									T
Template Predicted Secondary structure		.
Template SS confidence
			234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.											290	.	.	.	.	.	.	.	.	.	300	.										.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.
Query Sequence		T	Q	V	I	T	T	E	R	L	S	E	D	L	A	R	S	L	I	P	K	N	Y	C	V	E	D	C	N	Y	L	L	D	Y	Y	R	.	.	.	.	.	.	.	.	.	.	L	T	A	D	N	R	L	L	Y	G	G	G	.	.	.	.	.	.	.	.	.	V	V	Y	G	A	R	D	P	D	D	V	E	R	L
Query Conservation																																					.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	V	A	V	V	N	L	Q	Y	Q	G	A	H	L	P	V	Q	G	F	G	H	L	V	P	S	S	E	D	P	G	V	L	G	I	V	Y	D	S	V	A	F	P	E	Q	D	G	S	P	P	G	L	R	V	T	V	M	L	G	G	S	W	L	Q	T	L	E	A	S	G	C	V	L	S	Q	E	L	F	Q	Q	R
Template Known Secondary structure											T	T				S	S		S	S						T	T	T		S	S												G	G	G	S	T	T	T	T																			S	S
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.			.	.	.	.	340	.	.	.	.	.	.	.									.	.	350	.	.	.	.	.	.	.	.	.	360		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure																						.	.													.	.	.	.	.	.	.	.														.
Query SS confidence																						.	.													.	.	.	.	.	.	.	.														.
Query Sequence		V	V	P	K	L	L	K	T	F	P	Q	L	K	G	V	K	I	D	Y	R	.	.	W	T	G	N	F	L	L	T	L	S	R	M	.	.	.	.	.	.	.	.	P	Q	F	G	R	L	D	T	N	I	Y	Y	M	.	Q	G	Y	S	G	H	G	V	T	C	T	H	L	A	G	R	L	I	A	E	L	L	R	G
Query Conservation																						.	.													.	.	.	.	.	.	.	.														.
Alig confidence																						.	.													.	.	.	.	.	.	.	.														.
Template Conservation
Template Sequence		A	Q	E	A	A	A	T	Q	L	G	L	K	E	M	P	S	H	C	L	V	H	L	H	K	N	C	I	P	Q	Y	T	L	G	H	W	Q	K	L	E	S	A	R	Q	F	L	T	A	H	R	L	P	L	T	L	A	G	A	S	Y	E	G	V	A	V	N	D	C	I	E	S	G	R	Q	A	A	V	S	V	L	G
Template Known Secondary structure														S			S															B	T	T															T	T		S					S	T	T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
		385	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		473	.