Job Description P37906 Confidence 99.65% Date Thu Jan 5 11:57:45 GMT 2012 Rank 34 Aligned Residues 294 % Identity 17% Template c3nixF_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:flavoprotein/dehydrogenase; PDBTitle: crystal structure of flavoprotein/dehydrogenase from cytophaga2 hutchinsonii. northeast structural genomics consortium target chr43. Resolution 2.60 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	D	V	C	V	V	G	G	G	Y	T	G	L	S	S	A	L	H	L	A	E	A	G	F	D	V	V	V	L	E	A	S	R	I	G	F	G	A	S	G	R	N	G	G	Q	L	V	N	S	Y	S	R	D	I	D	V	I	E	K	S	Y	G	M	D	T	A	R	M	L	G	S	M	M	F	E	G	G	E	I	I
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	D	V	L	V	I	G	A	G	P	A	G	T	V	A	A	S	L	V	N	K	S	G	F	K	V	K	I	V	E	K	Q	K	F	P	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										S													T	T								S	S		S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	R	I	K	R	Y	Q	I	D	C	D	Y	R	P	G	G	L	F	V	A	M	N	D	K	Q	L	A	T	L	E	E	Q	K	E	N	W	E	R	Y	G	N	K	Q	L	E	L	L	D	A	N	A	I	R	R	E	V	A	S	D	R	Y	T	G	A	L	L	D	H	S	G	G	H	I	H	P	L	N	L	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	F	V	I	G	E	S	L	L	P	R	C	X	E	H	L	D	E	A	G	F	L	D	A	V	K	A	Q	G	F	Q	Q	K	F	G	A	K	F	V	R	G	K	E	I	A	D	F	N	F	S	D	Q	F	S	N	G	W	N	W	T	W	Q	V	P	R	G	N	F	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.			S			B			T	T									T								T													T	T							T	T	S		S	S		S		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
														42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220							.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																																			.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.
Query Sequence		I	G	E	A	D	A	I	R	L	N	G	G	R	V	Y	E	L	S	A	V	T	Q	I	Q	H	T	T	P	A	V	V	R	T	.	.	.	.	.	.	A	K	G	Q	V	T	A	K	Y	V	I	V	A	G	N	A	Y	L	G	D	K	V	E	P	E	L	A	K	R	S	M	P	C	G	T	Q	V	I	T	T	E
Query Conservation																																			.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.
Template Conservation
Template Sequence		K	T	L	A	D	E	A	A	R	Q	G	V	D	V	E	Y	E	V	G	V	T	D	I	K	F	F	G	T	D	S	V	T	T	I	E	D	I	N	G	N	K	R	E	I	E	A	R	F	I	I	D	A	S	G	Y	G	R	V	I	P	R	X	F	G	L	D	K	P	S	G	F	E	S	R	R	T	L	F	T	H
Template Known Secondary structure											T	T						S										T	T									T	T	S								S							G	G	G							T	T						S	S
Template Predicted Secondary structure
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.						.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.
Query SS confidence																																										.	.	.	.	.
Query Sequence		R	L	S	E	D	L	A	R	S	L	I	P	K	N	Y	C	V	E	D	C	N	Y	L	L	D	Y	Y	R	L	T	A	D	N	R	L	L	Y	G	G	G	.	.	.	.	.	V	V	Y	G	A	R	D	P	D	D	V	E	R	L	V	V	P	K	L	L	K	T	F	P	Q	L	K	G	V	K	I	D	Y	R	W
Query Conservation																																										.	.	.	.	.
Alig confidence														.	.																											.	.	.	.	.
Template Conservation														.	.
Template Sequence		I	K	D	V	K	R	P	V	G	N	R	I	.	.	T	A	V	V	H	K	P	K	V	W	I	W	V	I	P	F	S	N	G	N	T	S	V	G	F	V	G	E	P	S	Y	F	D	E	Y	T	G	T	P	E	E	R	X	R	A	X	I	A	N	E	G	H	I	A	E	R	F	K	S	E	E	F	L	F	E	P
Template Known Secondary structure					T	T								.	.							T	T									T	T	S														T	T	S		S											T	T		T	T	T					T	T			B	S	S
Template Predicted Secondary structure														.	.
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.			.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		337	.	.	340	.	.	.	.								.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure										.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.
Query Sequence		T	G	N	F	L	L	T	L	.	.	.	.	.	.	.	S	R	M	P	Q	F	G	R	L	D	T	N	I	Y	Y	M	Q	G	Y	S	G	H	G	V	T	C	T	H	L	A	G	R	L	I	A	E	L	L
Query Conservation										.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.												.	.	.
Template Conservation																												.	.	.
Template Sequence		R	T	I	E	G	Y	A	I	S	A	S	K	L	Y	G	D	G	F	V	L	T	G	N	A	T	E	.	.	.	F	L	D	P	I	F	S	S	G	A	T	F	A	X	E	S	G	S	K	G	G	K	L	A
Template Known Secondary structure												S		S			T	T					G	G	G	T		.	.	.	B			G	G	G
Template Predicted Secondary structure																												.	.	.
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.				.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions