Job Description P37906 Confidence 99.56% Date Thu Jan 5 11:57:45 GMT 2012 Rank 47 Aligned Residues 355 % Identity 17% Template c2ivdA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:protoporphyrinogen oxidase; PDBTitle: structure of protoporphyrinogen oxidase from myxococcus2 xanthus with acifluorfen Resolution 2.3 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.										.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Query Sequence		D	V	C	V	V	G	G	G	Y	T	G	L	S	S	A	L	H	L	A	E	A	G	F	D	V	V	V	L	E	A	S	R	I	G	F	G	A	S	G	R	.	.	.	.	.	.	.	.	.	N	G	G	Q	L	V	N	S	Y	S	R	D	I	D	V	I	E	K	S	Y	G	M	D	T	A	.	.	.	.	.	.
Query Conservation																																										.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Template Conservation
Template Sequence		N	V	A	V	V	G	G	G	I	S	G	L	A	V	A	H	H	L	R	S	R	G	T	D	A	V	L	L	E	S	S	A	R	L	G	G	A	V	G	T	H	A	L	A	G	Y	L	V	E	Q	G	P	N	S	F	L	D	R	E	P	A	T	R	A	L	A	A	A	L	N	L	E	G	R	I	R	A	A	D	P
Template Known Secondary structure									B												T	T	T								S	S	S	S	S	B	T	T							T	T					S	S						T	T											T	T		G	G	G				S		S
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
																				94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	M	L	G	S	M	M	F	E	G	G	E	I	I	R	E	R	I	K	R	Y	Q	I	D	C	D	Y	R	P	G	G	L	F	V	A	M	N	D	K	Q	L	A	T	L	E	E	Q	K	E	N	W	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	K	R	R	Y	V	Y	T	R	G	R	L	R	S	V	P	A	S	P	P	A	F	L	A	S	D	I	L	P	L	G	A	R	L	R	V	A	G	E	L	F	S	R	R	A	P	E	G	V	D	E	S	L	A	A	F	G	R	R	H	L	G	H	R	A	T	Q	V	L	L	D	A	V	Q	T	G	I	Y	A
Template Known Secondary structure		S									T	T								S						T		S	S	S										G	G	G	G						T	T				B									T								T
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
																145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	Y	G	N	K	Q	L	E	L	L	D	A	N	A	I	R	R	E	V	A	S	D	R	Y	T	G	A	L	L	D	H	S	G	G	H	I	H	P	L	N	L	A	I	G	E	A	D	A	I	R	L	N	G	G	R	V	Y	E	L	S	A	V	T	Q	I
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	D	V	E	Q	L	S	V	A	A	T	F	P	M	L	V	K	M	E	R	E	H	R	S	L	I	L	G	A	I	R	A	Q	K	A	Q	R	Q	A	G	T	A	P	K	L	S	G	A	L	S	T	F	D	G	G	L	Q	V	L	I	D	A	L	A	A	S	L	G	D	A	A	H	V	G	A	R	V	E	G	L
Template Known Secondary structure				T	T	T	B	B																S	S													T					S											T	T		T												G	G	G			S	S
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		211	.	.	.	.	.	.	.	.	220	.	.	.				.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.										240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.																	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.																	.	.	.	.	.	.	.	.	.
Query Sequence		Q	H	T	T	P	A	V	V	R	T	A	K	G	.	.	.	Q	V	T	A	K	Y	V	I	V	A	G	N	A	Y	L	G	.	.	.	.	.	.	.	.	.	D	K	V	E	P	E	L	A	K	R	S	M	P	C	G	T	Q	V	I	T	T	E	R	L	S	E	D	L	A	R	S	L	I	P	K	N	Y	C	V
Query Conservation															.	.	.																	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.																	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	R	E	G	W	R	L	I	I	E	E	H	G	R	R	A	E	L	S	V	A	Q	V	V	L	A	A	P	A	H	A	T	A	K	L	L	R	P	L	D	D	A	L	A	A	L	V	A	G	I	A	Y	A	P	I	A	V	V	H	L	G	F	D	A	G	T	L	P	A	P	D	G	F	G	F	L	V	P	A	E
Template Known Secondary structure													T	T								S						S										T	T	T										T			B												T	T	S	S					S	S						G	G
Template Predicted Secondary structure
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.								290	.	.	.	.	.	.	.	.	.						300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.				.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.											.	.	.	.	.																											.	.	.
Query SS confidence													.	.	.	.	.	.	.											.	.	.	.	.																											.	.	.
Query Sequence		E	D	C	N	Y	L	L	D	Y	Y	R	.	.	.	.	.	.	.	L	T	A	D	N	R	L	L	Y	G	.	.	.	.	.	G	G	V	V	Y	G	A	R	D	P	D	D	V	E	R	L	V	V	P	K	L	L	K	T	F	P	.	.	.	Q	L	K	G	V	K	I	D	Y	R	W	T	G	N	F	L	L	T
Query Conservation													.	.	.	.	.	.	.											.	.	.	.	.																											.	.	.
Alig confidence													.	.	.	.	.	.	.											.	.	.	.	.																											.	.	.
Template Conservation
Template Sequence		E	Q	R	R	M	L	G	A	I	H	A	S	T	T	F	P	F	R	A	E	G	G	R	V	L	Y	S	C	M	V	G	G	A	R	Q	P	G	L	V	E	Q	D	E	D	A	L	A	A	L	A	R	E	E	L	K	A	L	A	G	V	T	A	R	P	S	F	T	R	V	F	R	W	P	L	G	I	P	Q	Y	N
Template Known Secondary structure		G			S												G	G	G	B	S	T	T											T	T		G	G	G	G	G	S																					S			S								S	S			B			B
Template Predicted Secondary structure
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
		344	.	.	.	.	.	350	.	.	.	.							.	.	.	.	.	360		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure													.	.	.	.	.	.							.
Query SS confidence													.	.	.	.	.	.							.
Query Sequence		L	S	R	M	P	Q	F	G	R	L	D	.	.	.	.	.	.	T	N	I	Y	Y	M	.	Q	G	Y	S	G	H	G	V	T	C	T	H	L	A	G	R	L	I	A	E	L	L	R
Query Conservation													.	.	.	.	.	.							.
Alig confidence													.	.	.	.	.	.							.
Template Conservation
Template Sequence		L	G	H	L	E	R	V	A	A	I	D	A	A	L	Q	R	L	P	G	L	H	L	I	G	N	A	Y	K	G	V	G	L	N	D	C	I	R	N	A	A	Q	L	A	D	A	L	V
Template Known Secondary structure		T	T														T	S	T	T					S	T	T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.