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Job DescriptionP37906
Confidence99.59%DateThu Jan 5 11:57:45 GMT 2012
Rank40Aligned Residues184
% Identity13%Templatec2aczA_
PDB info PDB header:oxidoreductase/electron transportChain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with atpenin a52 inhibitor co-crystallized at the ubiquinone binding site
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60.........70.........80 .........90........
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Query Sequence  TCDVCVVGGGYTGLSSALHLAEAGFDVVVLEASRIGFGASGRNGGQLVNSYSRD. . . . . . . . IDVIEKSYGMDTARMLGS
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Template Sequence  EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIE
Template Known Secondary structure 
BS


STT


SS
GGGSGGGG

S




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TS
S
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   7..10.........20.........30.........40.........50.........60.........70.........80......
 
   99100.........110.........120.........130.........140.........150.........160.........170........
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Query Sequence  MMFEGGEIIRERIKRYQIDCDYRPGGLFVAMNDKQLATLEEQKENWERYGNKQLELLDANAIRREVASDRYTGALLDHSG
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Template Sequence  YMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . GQSKNFGGEQAARTAAA
Template Known Secondary structure  TTT



B
S

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SS.............................B

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S
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   87..90.........100.........110.........120 .........130.......
 
   179180.........190.........200.........210........ .220.........230.........
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Query Sequence  GHIHPLNLAIGEADAIRLNGGRVYELSAVTQIQHTTPAVV. . . . . . . . . RTAKGQVTAKYVIVAGNAYLG
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Template Sequence  ADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGR
Template Known Secondary structure  TT
TT
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TTS
TTT


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TT
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   138.140.........150.........160.........170.........180.........190.........200.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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