 |
Job Description | P0AEC3 | Confidence | 96.00% | Date | Thu Jan 5 11:22:59 GMT 2012 |
Rank | 261 | Aligned Residues | 78 |
% Identity | 21% | Template | c2vycA_ |
PDB info |
PDB header:lyase | Chain: A: PDB Molecule:biodegradative arginine decarboxylase; |
PDBTitle: crystal structure of acid induced arginine decarboxylase2 from e. coli
|
Resolution | 2.4 Å |
|
 |
  |   |
527 | . | . | 530 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
. | 540 | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | |
. | 570 | . | . | . | . | . | . | . | . | . | 580 | . | |
|
|
|
. | . | . | . | . | . | . | . | 590 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
| . |
|
|
|  |  |  |  |  |
|
|
|
|
| . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | V | L | L | V | E | D | I | E | L | N | V | . |
. |
. |
. |
. |
. |
. |
. |
I | V | A | R | S | V | L | E | K | L | G | N | S | V | D | V | A | M | T | G | K | A | A | L | E | M | F | K | P | G | . |
E | Y | D | L | V | L | L | D | I | Q | L | P | D | . |
. |
. |
. |
M | T | G | L | D | I | S | R | E | L | T | K |
Query Conservation |   |
  |
|
|
|
|
|
|   |   |   |
|   | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |
|   |   |
|   |
|
|
|   |   |   |   |   |   | . |   |   |
|
|
|
|   |
|   |   |
|
|   | . | . | . | . |
|
|
|   |
|   |   |   |   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
K | V | L | I | V | E | S | E | F | L | H | Q | D | T | W | V | G | N | A | V | E | R | L | A | D | A | L | S | Q | Q | N | V | T | V | I | K | S | T | S | F | D | D | G | F | A | I | L | S | S | N | E | A | I | D | C | L | M | F | S | Y | Q | M | E | H | P | D | E | H | Q | N | V | R | Q | L | I | G | K | L | H | E |
Template Known Secondary structure |   |
 |  |  |  |  |
|
| T | T | S | T | T | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  | S | S |  |  |  |  |  |  |  |  | T | T | T |
|
|
| S |  |  |  |  |  |
|
|
|
| S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
  |
  |   |
594 | . | . | . | . | . | 600 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | Y | P | R | E | D | L | P | P | L | V | A | L | T |
Query Conservation |   |
  |   |   |   |   |   |   |   |
|
|
|   |   |
|
Alig confidence |   |
|
|
|
| . | . | . |
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   | . | . | . |   |   |   |   |   |   |   |
Template Sequence |   |
R | Q | Q | N | . |
. |
. |
V | P | V | F | L | L | G |
Template Known Secondary structure |   |
 | S | T | T | . | . | . |
|
|  |  |  |  |  |
Template Predicted Secondary structure |   |
 |
|
|
| . | . | . |
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
82 | . | . | . | |
|
|
. | . | . | . | 90 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|