Job Description P0AEC3 Confidence 48.09% Date Thu Jan 5 11:22:59 GMT 2012 Rank 345 Aligned Residues 150 % Identity 13% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.			.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.
Predicted Secondary structure																																																															.	.
Query SS confidence																																																															.	.
Query Sequence		A	V	S	R	R	L	A	K	N	M	G	G	D	I	T	V	T	S	E	Q	G	K	G	S	T	F	T	L	T	I	H	A	P	S	V	A	E	E	V	D	D	A	F	D	E	D	D	M	P	L	P	A	L	N	V	L	L	V	E	D	I	.	.	E	L	N	V	I	V	A	R	S	V	L	E	K	L	G	N	S
Query Conservation																																																															.	.
Alig confidence																	.																																														.	.
Template Conservation																	.
Template Sequence		A	V	F	K	E	L	V	K	L	V	D	P	G	V	K	.	A	W	T	P	T	K	G	N	V	I	M	F	V	G	L	Q	G	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y	Q	R	K	G	W	K	T	C	L	I	C	A	D	T	F	R	A	G	A	F	D	Q	L	K	Q	N	A	T	K	A	R	I	P
Template Known Secondary structure																	.						S	S								S	T	T	S	S															T	T											S	S	S														T
Template Predicted Secondary structure																	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		552	.	.	.	.	.	.								.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.							.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.		.	610	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.																												.	.	.	.	.	.																								.
Query SS confidence									.	.	.	.	.	.	.																												.	.	.	.	.	.																								.
Query Sequence		V	D	V	A	M	T	G	.	.	.	.	.	.	.	K	A	A	L	E	M	F	K	P	G	E	Y	D	L	V	L	L	D	I	Q	L	P	D	M	T	G	L	.	.	.	.	.	.	D	I	S	R	E	L	T	K	R	Y	P	R	E	D	L	P	P	L	V	A	L	T	A	.	N	V	L	K	D	K	Q	E	Y
Query Conservation									.	.	.	.	.	.	.																												.	.	.	.	.	.																								.
Alig confidence									.	.	.	.	.	.	.																				.	.							.	.	.	.	.	.																								.
Template Conservation																																			.	.
Template Sequence		F	Y	G	S	Y	T	E	M	D	P	V	I	I	A	S	E	G	V	E	K	F	K	N	E	N	F	E	I	I	I	V	D	T	.	.	S	G	R	H	K	Q	E	D	S	L	F	E	E	M	L	Q	V	A	N	A	I	Q	P	D	N	I	V	Y	V	M	D	A	S	I	G	Q	A	C	E	A	Q	A	K	A	F
Template Known Secondary structure									S																T	T									.	.					T	T																		S								T	T			T	T
Template Predicted Secondary structure																																			.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.			.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		618	.		620	.	.	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		L	N	.	A	G	M	D	D	V	L
Query Conservation				.
Alig confidence				.
Template Conservation
Template Sequence		K	D	K	V	D	V	A	S	V	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions