Job Description P0AEC3 Confidence 48.54% Date Thu Jan 5 11:22:59 GMT 2012 Rank 342 Aligned Residues 151 % Identity 20% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.				.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550
Predicted Secondary structure																																																															.	.	.
Query SS confidence																																																															.	.	.
Query Sequence		A	V	S	R	R	L	A	K	N	M	G	G	D	I	T	V	T	S	E	Q	G	K	G	S	T	F	T	L	T	I	H	A	P	S	V	A	E	E	V	D	D	A	F	D	E	D	D	M	P	L	P	A	L	N	V	L	L	V	E	D	I	.	.	.	E	L	N	V	I	V	A	R	S	V	L	E	K	L	G	N
Query Conservation																																																															.	.	.
Alig confidence															.																																			.													.	.	.
Template Conservation															.																																			.
Template Sequence		T	V	Y	E	A	L	K	E	A	L	G	G	E	.	A	R	L	P	V	L	K	D	R	N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	.	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V
Template Known Secondary structure											T	T	S	S	.								S	S									T	T	S	S														.		T	T										S	S																T
Template Predicted Secondary structure															.																																			.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		551	.	.	.	.	.	.	.								.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.		.	.	.	580	.	.	.	.				.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.		.	610	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.																			.									.	.	.																									.
Query SS confidence										.	.	.	.	.	.	.																			.									.	.	.																									.
Query Sequence		S	V	D	V	A	M	T	G	.	.	.	.	.	.	.	K	A	A	L	E	M	F	K	P	G	E	Y	D	L	V	L	L	D	.	I	Q	L	P	D	M	T	G	.	.	.	L	D	I	S	R	E	L	T	K	R	Y	P	R	E	D	L	P	P	L	V	A	L	T	A	.	N	V	L	K	D	K	Q	E	Y	L
Query Conservation										.	.	.	.	.	.	.																			.									.	.	.																									.
Alig confidence										.	.	.	.	.	.	.																			.									.	.	.																									.
Template Conservation
Template Sequence		P	V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	V	L	G	P	D	E	V	L	L	V	L	D	A	M	T	G	Q	E	A	L	S	V	A	R	A	F	D
Template Known Secondary structure								T	T																		T		S										S	S																			S								S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		619	620		.	.	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		N	A	.	G	M	D	D	V	L
Query Conservation				.
Alig confidence				.
Template Conservation
Template Sequence		E	K	V	G	V	T	G	L	V
Template Known Secondary structure				S
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions