 |
Job Description | P0AEC3 | Confidence | 40.99% | Date | Thu Jan 5 11:22:59 GMT 2012 |
Rank | 370 | Aligned Residues | 104 |
% Identity | 18% | Template | c2cnwF_ |
PDB info |
PDB header:signal recognition | Chain: F: PDB Molecule:cell division protein ftsy; |
PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy
|
Resolution | 2.39 Å |
|
 |
  |   |
524 | . | . | . | . | . | 530 | . | . | . | . | |
|
|
. | . | . | . | . | 540 | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
. | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | |
|
. | 580 | . | . | . | . | |
|
|
|
|
. | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
| . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
|
|
|  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
| . | . |
|
|
|
|
|  | . | . | . | . | . |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
Query Sequence |   |
P | A | L | N | V | L | L | V | E | D | I | . |
. |
. |
E | L | N | V | I | V | A | R | S | V | L | E | K | L | G | N | S | V | D | V | A | M | T | G | . |
. |
. |
. |
. |
. |
. |
K | A | A | L | E | M | F | K | P | G | E | Y | D | L | V | L | L | D | I | Q | . |
. |
L | P | D | M | T | G | . |
. |
. |
. |
. |
L | D |
Query Conservation |   |
  |   |   |   |
|
|
|
|
|
|   | . | . | . |   |   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |
|   |   |
| . | . | . | . | . | . | . |   |
|
|
|   |   |   |   |   |   |   |   |
|
|
|
|   |
|   |   | . | . |
|
|   |
|
|
| . | . | . | . | . |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
| . | . | . | . | . |
|
|
Template Conservation |   |
  |
|   |   |
|   |
|
|   |   |
|   |   |
|   |   |
|   |   |
|
|   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |
|
|   |   |
Template Sequence |   |
L | G | K | K | V | M | F | C | A | G | D | T | F | R | A | A | G | G | T | Q | L | S | E | W | G | K | R | L | S | I | P | V | I | Q | G | P | E | G | T | D | P | A | A | L | A | Y | D | A | V | Q | A | M | K | A | R | G | Y | D | L | L | F | V | D | T | A | G | R | L | H | T | K | H | N | L | M | E | E | L | K | K |
Template Known Secondary structure |   |
T | T |
|
|  |  |  |  |
|
|
|
| S | S | T | T |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |
|
|
| T | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |
|
|
|
|
|
| T | T |
|  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
129 | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . |
  |
  |   |
587 | . | . | 590 | . | . | . | . | . | . | . | . | . | 600 | . | . | . | . | . | . | . | . | . | 610 | . | |
. | . | . | . | . | . | . | |
|
|
|
. | 620 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|  | . |  |  |  |  |  |  |  | . | . | . | . |  |
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | S | R | E | L | T | K | R | Y | P | R | E | D | L | P | P | L | V | A | L | T | A | N | V | L | . |
K | D | K | Q | E | Y | L | . |
. |
. |
. |
N | A | G | M | D | D | V | L | S |
Query Conservation |   |
  |   |   |   |
|
|   |   |   |   |   |   |   |   |   |
|
|
|   |   |
|
|   |   |   | . |   |   |   |   |   |   |   | . | . | . | . |   |   |
|   |
|   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
Template Sequence |   |
V | K | R | A | I | A | K | A | D | P | E | E | P | K | E | V | W | L | V | L | D | A | V | T | G | Q | N | G | L | E | Q | A | K | K | F | H | E | A | V | G | L | T | G | V | I | V |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |
| T | T |
|
|
|  |  |  |  |  |  |  | T | T |
|
| T |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| S |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
209 | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|