Job Description P0AEC3 Confidence 79.71% Date Thu Jan 5 11:22:59 GMT 2012 Rank 281 Aligned Residues 153 % Identity 13% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.				.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550
Predicted Secondary structure																																																															.	.	.
Query SS confidence																																																															.	.	.
Query Sequence		A	V	S	R	R	L	A	K	N	M	G	G	D	I	T	V	T	S	E	Q	G	K	G	S	T	F	T	L	T	I	H	A	P	S	V	A	E	E	V	D	D	A	F	D	E	D	D	M	P	L	P	A	L	N	V	L	L	V	E	D	I	.	.	.	E	L	N	V	I	V	A	R	S	V	L	E	K	L	G	N
Query Conservation																																																															.	.	.
Alig confidence																																																															.	.	.
Template Conservation
Template Sequence		I	V	Y	D	E	L	S	K	L	F	G	G	D	K	E	P	N	V	N	P	T	K	L	P	F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	V
Template Known Secondary structure											T	T		S						S		S	S	S	S								S	S	S	S	S	S	T	T	T										T	T	S					B						S	S	S		S											T	T
Template Predicted Secondary structure
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		551	.	.	.	.	.	.	.								.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.			.	.	580	.	.	.					.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.		.	610	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.																				.	.							.	.	.	.																										.
Query SS confidence										.	.	.	.	.	.	.																				.	.							.	.	.	.																										.
Query Sequence		S	V	D	V	A	M	T	G	.	.	.	.	.	.	.	K	A	A	L	E	M	F	K	P	G	E	Y	D	L	V	L	L	D	I	.	.	Q	L	P	D	M	T	.	.	.	.	G	L	D	I	S	R	E	L	T	K	R	Y	P	R	E	D	L	P	P	L	V	A	L	T	A	.	N	V	L	K	D	K	Q	E
Query Conservation										.	.	.	.	.	.	.																				.	.							.	.	.	.																										.
Alig confidence										.	.	.	.	.	.	.																				.	.							.	.	.	.																										.
Template Conservation
Template Sequence		Q	V	Y	G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G	V	D	I	F	V	K	N	K	M	D	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	T	K	L	L	E	E	M	K	E	M	Y	D	V	L	K	P	D	D	V	I	L	V	I	D	A	S	I	G	Q	K	A	Y	D	L	A	S	R
Template Known Secondary structure							S	S				T	T													T	T		S									S			S	S	T																		S								T	T	T	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		617	.	.		620	.	.	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		Y	L	N	.	A	G	M	D	D	V	L
Query Conservation					.
Alig confidence					.
Template Conservation
Template Sequence		F	H	Q	A	S	P	I	G	S	V	I
Template Known Secondary structure				T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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