Job Description P0AEC3 Confidence 99.69% Date Thu Jan 5 11:22:59 GMT 2012 Rank 131 Aligned Residues 202 % Identity 12% Template c1mx0D_ PDB info PDB header:isomerase Chain: D: PDB Molecule:type ii dna topoisomerase vi subunit b; PDBTitle: structure of topoisomerase subunit Resolution 2.30 Å

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		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.							.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
Predicted Secondary structure																					.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.
Query Sequence		L	R	Q	I	L	W	N	L	I	S	N	A	V	K	F	T	Q	Q	G	.	.	.	.	.	.	Q	V	T	V	R	V	R	Y	D	E	G	D	M	L	H	F	E	V	E	D	S	G	I	G	I	P	Q	D	E	L	D	K	I	F	A	M	Y	Y	Q	V	K	D	S	H	G	G	K	P	A	T	G	T	G	I	G
Query Conservation																					.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.
Template Conservation
Template Sequence		L	Y	Q	T	V	R	E	L	I	E	N	S	L	D	A	T	D	V	H	G	I	L	P	N	I	K	I	T	I	D	L	I	D	D	A	R	Q	I	Y	K	V	N	V	V	D	N	G	I	G	I	P	P	Q	E	V	P	N	A	F	G	R	V	L	Y	S	S	K	Y	V	N	R	Q	T	R	G	X	Y	G	L	G
Template Known Secondary structure																T	T	G	G	G	T														T	T	T	T										S					G	G	G							S	S	S			S			S	S	S			S			S	S
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		473	.	.	.	.	.	.	480	.	.	.	.	.	.		.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.							.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.
Predicted Secondary structure																.																																									.	.	.	.	.	.
Query SS confidence																.																																									.	.	.	.	.	.
Query Sequence		L	A	V	S	R	R	L	A	K	N	M	G	G	D	.	I	T	V	T	S	E	Q	G	K	G	S	T	F	T	L	T	I	H	A	P	S	V	A	E	E	V	D	D	A	F	D	E	D	D	M	P	L	P	A	L	.	.	.	.	.	.	N	V	L	L	V	E	D	I	E	L	N	V	I	V	A	R	S	V	L
Query Conservation																.																																									.	.	.	.	.	.
Alig confidence																.																																									.	.	.	.	.	.
Template Conservation
Template Sequence		V	K	A	A	V	L	Y	S	Q	X	H	Q	D	K	P	I	E	I	E	T	S	P	V	N	S	K	R	I	Y	T	F	K	L	K	I	D	I	N	K	N	E	P	I	I	V	E	R	G	S	V	E	N	T	R	G	F	H	G	T	S	V	A	I	S	I	P	G	D	W	P	K	A	K	S	R	I	Y	E	Y	I
Template Known Secondary structure																								T	T		S											T	T	T	T														S
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		546	.	.								.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.		.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600
Predicted Secondary structure					.	.	.	.	.	.	.																																			.
Query SS confidence					.	.	.	.	.	.	.																																			.
Query Sequence		E	K	L	.	.	.	.	.	.	.	G	N	S	V	D	V	A	M	T	G	K	A	A	L	E	M	F	K	P	G	E	Y	D	L	V	L	L	D	I	Q	L	P	D	M	.	T	G	L	D	I	S	R	E	L	T	K	R	Y	P	R	E	D	L
Query Conservation					.	.	.	.	.	.	.																																			.
Alig confidence					.	.	.	.	.	.	.																																			.
Template Conservation
Template Sequence		K	R	T	Y	I	I	T	P	Y	A	E	F	I	F	K	D	P	E	G	N	V	T	Y	Y	P	R	L	T	N	K	I	P	K	P	P	Q	E	V	K	P	H	P	Y	G	V	D	R	E	E	I	K	I	L	I	N	N	L	K	R	D	Y	T	I
Template Known Secondary structure						T	T		T	T								T	T	S										S													S	T	T												T		S	S			B
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions