Job Description P0A8T1 Confidence 95.62% Date Thu Jan 5 11:08:40 GMT 2012 Rank 344 Aligned Residues 73 % Identity 22% Template c3trkA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:nonstructural polyprotein; PDBTitle: structure of the chikungunya virus nsp2 protease Resolution 2.40 Å

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		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.															.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.			.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Query Sequence		S	D	R	L	E	L	Y	L	P	K	D	Q	P	E	E	M	K	A	D	V	V	V	A	N	I	L	A	G	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	E	L	A	P	L	I	S	V	L	P	V	S	G	G	L	L	G	L	S	.	.	G	I	L	A	S	Q	A	E	S	V	C	E	A	Y
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation
Template Sequence		A	D	Y	T	Y	N	L	E	L	G	L	P	A	T	L	G	R	Y	D	L	V	V	I	N	I	H	T	P	F	R	I	H	H	Y	Q	Q	C	V	D	H	A	X	K	L	Q	X	L	G	G	D	S	L	R	L	L	K	P	G	G	S	L	L	I	R	A	Y	G	Y	A	D	R	T	S	E	R	V	I	C	V	L
Template Known Secondary structure			S					G	G	G				G	G	G																S	S																			G	G	G	G																S
Template Predicted Secondary structure
Template SS confidence
		1197	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.
		271	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	S	F	A	L	D	P	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	R	K	F	R	S	S	R	A
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		1277	.	.	1280	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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