Job Description P0A8T1 Confidence 98.99% Date Thu Jan 5 11:08:40 GMT 2012 Rank 264 Aligned Residues 145 % Identity 17% Template c3khkA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:type i restriction-modification system PDBTitle: crystal structure of type-i restriction-modification system2 methylation subunit (mm_0429) from methanosarchina mazei. Resolution 2.55 Å

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		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.																	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																							.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	T	H	P	T	T	S	L	C	L	Q	W	L	D	S	L	D	L	T	G	K	.	T	V	I	D	F	G	C	G	S	G	I	L	A	I	A	A	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	A	A	K	A	I	G	I	D	I	D	P	Q	A	I	Q	A	S	R	D	N	A	E
Query Conservation																							.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	Q	Y	Y	T	P	K	S	I	V	T	L	I	V	E	M	L	E	P	Y	K	G	R	V	Y	D	P	A	M	G	S	G	G	F	F	V	S	S	D	K	F	I	E	K	H	A	N	V	K	H	Y	N	A	S	E	Q	K	K	Q	I	S	V	Y	G	Q	E	S	N	P	T	T	W	K	L	A	A	M	N	M	V
Template Known Secondary structure		T	T	T																		S						S	S		T	T																			T	S						G	G	G
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.					.	.	.	.	.	.	.	230	.	.	.	.	.	.																															.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	N	G	V	S	D	R	L	E	L	Y	L	P	K	D	Q	P	E	E	M	.	.	.	.	K	A	D	V	V	V	A	N	I	L	A	G	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	L	A	P	L	I	S	V	L	P	V
Query Conservation																						.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	R	G	I	D	F	N	F	G	K	K	N	A	D	S	F	L	D	D	Q	H	P	D	L	R	A	D	F	V	M	T	N	P	P	F	N	M	K	D	W	W	H	E	K	L	A	D	D	P	R	W	T	I	N	T	N	K	R	I	L	T	P	P	T	G	N	A	N	F	A	W	M	L	H	M	L	Y	H	L	A
Template Known Secondary structure			T	T				B			S	S	S			T	T	T	S		S		T	T												S	S			S				G	G	G	T	T		G	G	G													T	T		T											T
Template Predicted Secondary structure
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
		249	250	.	.	.	.	.	.				.	.	.				260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure										.	.	.				.	.	.
Query SS confidence										.	.	.				.	.	.
Query Sequence		S	G	G	L	L	G	L	S	.	.	.	G	I	L	.	.	.	A	S	Q	A	E	S	V	C	E	A	Y	A	D	S	F	A	L	D	P	V	V	E	K	E	E
Query Conservation										.	.	.				.	.	.
Alig confidence										.	.	.				.	.	.
Template Conservation
Template Sequence		P	T	G	S	M	A	L	L	L	A	N	G	S	M	S	S	N	T	N	N	E	G	E	I	R	K	T	L	V	E	Q	D	L	V	E	C	M	V	A	L	P	G
Template Known Secondary structure												T							G	G	G											T	T										T
Template Predicted Secondary structure
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions