Job Description P0A8T1 Confidence 80.50% Date Thu Jan 5 11:08:40 GMT 2012 Rank 483 Aligned Residues 118 % Identity 18% Template c3g79A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ndp-n-acetyl-d-galactosaminuronic acid dehydrogenase; PDBTitle: crystal structure of ndp-n-acetyl-d-galactosaminuronic acid2 dehydrogenase from methanosarcina mazei go1 Resolution 2.40 Å

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		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.			.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.																							.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																						.	.														.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.														.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Q	W	L	D	S	L	D	L	T	G	K	T	V	I	D	F	G	C	G	.	.	S	G	I	L	A	I	A	A	L	K	L	G	A	.	A	K	A	I	G	I	D	I	D	P	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	Q	A	S	R	D	N	A	E	R
Query Conservation																						.	.														.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.														.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	K	L	L	K	E	R	G	P	I	K	K	I	G	V	L	G	M	G	Y	V	G	I	P	A	A	V	L	F	A	D	A	P	C	F	E	K	V	L	G	F	Q	R	N	S	K	S	S	G	Y	K	I	E	M	L	N	R	G	E	S	P	L	K	G	E	E	P	G	L	E	E	L	I	G	K	V	V	K	A
Template Known Secondary structure											S										S	T	T											S	T	T												T	T	T	T	T						T	T	T				S	S			G	G	G											T
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.													.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.																								.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.																								.
Query Sequence		N	G	V	S	D	R	L	E	L	Y	L	P	K	D	Q	P	E	E	M	K	A	D	V	V	V	A	N	I	L	.	.	.	.	.	.	.	.	.	.	.	.	A	G	P	L	R	E	L	A	P	L	I	S	V	L	P	V	S	G	G	L	L	G	L	.	S	G	I	L	A	S	Q	A	E	S	V	C	E	A	Y
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.																								.
Alig confidence						.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation						.	.	.	.	.	.
Template Sequence		G	K	F	E	.	.	.	.	.	.	C	T	P	D	F	S	R	I	S	E	L	D	A	V	T	L	A	I	Q	T	P	F	A	N	P	K	D	L	E	P	D	F	S	A	L	I	D	G	I	R	N	V	G	K	Y	L	K	P	G	M	L	V	V	L	E	S	T	I	T	P	G	T	T	E	G	M	A	K	Q	I
Template Known Secondary structure		T				.	.	.	.	.	.			S		G	G	G	G	G	G		S												S	S			S	S																			T	T							S				T	T	T	T	T	T
Template Predicted Secondary structure						.	.	.	.	.	.
Template SS confidence
		88	.	90	.							.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		271	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		162	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions