Job Description P0A8T1 Confidence 99.35% Date Thu Jan 5 11:08:40 GMT 2012 Rank 228 Aligned Residues 149 % Identity 14% Template c3bwbA_ PDB info PDB header:transferase Chain: A: PDB Molecule:spermidine synthase; PDBTitle: crystal structure of the apo form of spermidine synthase from2 trypanosoma cruzi at 2.5 a resolution Resolution 2.50 Å

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		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.				.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																																					.																											.	.	.												.	.	.	.
Query SS confidence																																					.																											.	.	.												.	.	.	.
Query Sequence		T	S	L	C	L	Q	W	L	D	S	L	D	L	T	G	K	T	V	I	D	F	G	C	G	S	G	I	L	A	I	A	A	L	K	L	.	G	A	A	K	A	I	G	I	D	I	D	P	Q	A	I	Q	A	S	R	D	N	A	E	R	N	G	.	.	.	V	S	D	R	L	E	L	Y	L	P	K	.	.	.	.
Query Conservation																																					.																											.	.	.												.	.	.	.
Alig confidence																																					.																											.	.	.												.	.	.	.
Template Conservation
Template Sequence		H	E	V	L	G	H	T	S	L	C	S	H	P	K	P	E	R	V	L	I	I	G	G	G	D	G	G	V	L	R	E	V	L	R	H	G	T	V	E	H	C	D	L	V	D	I	D	G	E	V	X	E	Q	S	K	Q	H	F	P	Q	I	S	R	S	L	A	D	P	R	A	T	V	R	V	G	D	G	L	A	F
Template Known Secondary structure											T	T	S	S											T	T	S							T	T		T	T									S																	G	G	G	G		T	T						S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
			217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.					.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.					.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure		.																					.	.	.	.																						.	.	.	.																.											.	.	.	.
Query SS confidence		.																					.	.	.	.																						.	.	.	.																.											.	.	.	.
Query Sequence		.	D	Q	P	E	E	M	K	A	D	V	V	V	A	N	I	L	A	G	P	L	.	.	.	.	R	E	L	A	P	L	I	S	V	L	P	V	S	G	G	L	L	G	L	S	G	.	.	.	.	I	L	A	S	Q	A	E	S	V	C	E	A	Y	A	D	.	S	F	A	L	D	P	V	V	E	K	.	.	.	.
Query Conservation		.																					.	.	.	.																						.	.	.	.																.											.	.	.	.
Alig confidence		.																					.	.	.	.																						.	.	.	.																.											.	.	.	.
Template Conservation
Template Sequence		V	R	Q	T	P	D	N	T	Y	D	V	V	I	I	D	T	T	D	P	A	S	K	L	F	G	E	A	F	Y	K	D	V	L	R	I	L	K	P	D	G	I	C	C	N	Q	G	E	S	I	W	L	D	L	E	L	I	E	K	X	S	R	F	I	R	E	T	G	F	A	S	V	Q	Y	A	L	X	H	V	P	T
Template Known Secondary structure				T	S		T	T										S						S	S																									T	T	T																T		S										T	T
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
					283	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	E	E	W	C	R	I	T	G	R	K	N
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		Y	P	C	G	S	I	G	T	L	V	C	S	K	K
Template Known Secondary structure		S	T	T	S									S	S
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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