Job Description P0A8T1 Confidence 99.67% Date Thu Jan 5 11:08:40 GMT 2012 Rank 116 Aligned Residues 149 % Identity 22% Template c3axtA_ PDB info PDB header:transferase Chain: A: PDB Molecule:probable n(2),n(2)-dimethylguanosine trna methyltransferase PDBTitle: complex structure of trna methyltransferase trm1 from aquifex aeolicus2 with s-adenosyl-l-methionine Resolution 2.49 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.			.	180
Predicted Secondary structure																																																																														.	.
Query SS confidence																																																																														.	.
Query Sequence		F	H	P	M	R	F	G	E	R	L	W	I	C	P	S	W	R	D	V	P	D	E	N	A	V	N	V	M	L	D	P	G	L	A	F	G	T	G	T	H	P	T	T	S	L	C	L	Q	W	L	D	S	L	D	L	T	G	K	T	V	I	D	F	G	C	G	S	G	I	L	A	I	A	A	L	K	.	.	L	G
Query Conservation																																																																														.	.
Alig confidence																														.									.	.	.																																					.	.
Template Conservation																														.									.	.	.
Template Sequence		M	E	I	V	Q	E	G	I	A	K	I	I	V	P	E	I	P	K	T	V	S	S	D	M	P	V	F	Y	.	N	P	R	M	R	V	N	R	.	.	.	D	L	A	V	L	G	L	E	Y	L	C	K	K	L	G	R	P	V	K	V	A	D	P	L	S	A	S	G	I	R	A	I	R	F	L	L	E	T	S	C
Template Known Secondary structure								T	T										S	S			T	T			S	S		.		G	G	G					.	.	.																S							S	S		T	T	T											S
Template Predicted Secondary structure																														.									.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.				.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.						.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																														.									.	.	.	.	.
Query SS confidence																														.									.	.	.	.	.
Query Sequence		A	A	K	A	I	G	I	D	I	D	P	Q	A	I	Q	A	S	R	D	N	A	E	R	N	G	V	S	D	.	R	L	E	L	Y	L	P	K	.	.	.	.	.	D	Q	P	E	E	M	K	A	D	V	V	V	A	N	I	L	A	G	P	L	R	E	L	A	P	L	I	S	V	L	P	V	S	G	G	L	L	G
Query Conservation																														.									.	.	.	.	.
Alig confidence																														.									.	.	.	.	.																.
Template Conservation																																																											.
Template Sequence		V	E	K	A	Y	A	N	D	I	S	S	K	A	I	E	I	M	K	E	N	F	K	L	N	N	I	P	E	D	R	Y	E	I	H	G	M	E	A	N	F	F	L	R	K	E	W	G	F	G	F	D	Y	V	D	L	D	P	.	F	G	T	P	V	P	F	I	E	S	V	A	L	S	M	K	R	G	G	I	L	S
Template Known Secondary structure										S															T	T			G	G	G						S							T	S			S	S										.	S	S
Template Predicted Secondary structure																																																											.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		255	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		156	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions