Job Description P0A8T1 Confidence 95.98% Date Thu Jan 5 11:08:40 GMT 2012 Rank 340 Aligned Residues 126 % Identity 17% Template c2qy6A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0209 protein yfck; PDBTitle: crystal structure of the n-terminal domain of upf0209 protein yfck2 from escherichia coli o157:h7 Resolution 2.00 Å

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		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.														180	.	.	.	.	.	.	.	.				.	190	.	.	.	.	.	.												.	.	.	200	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	W	L	D	S	L	D	L	T	G	K	T	V	I	D	F	G	C	G	S	G	I	L	A	I	A	A	L	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	A	K	A	I	G	I	D	.	.	.	I	D	P	Q	A	I	Q	A	.	.	.	.	.	.	.	.	.	.	.	S	R	D	N	A	E
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.									.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.									.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	R	F	P	E	H	P	H	P	L	F	V	V	A	E	S	G	F	G	T	G	L	N	F	L	T	L	W	Q	A	F	D	Q	F	R	E	A	H	P	Q	A	Q	L	Q	R	L	H	F	I	S	F	E	K	F	P	L	T	R	A	D	L	A	L	A	H	Q	H	W	P	E	L	A	P	W	A	E	Q	L	Q	A
Template Known Secondary structure				G	G	G		S	S	S							S			T	T	S																		T	T	S	S											S	S												T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		203	.	.	.												.	.	.	210	.	.	.	.	.	.	.	.	.	220									.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.							.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Query Sequence		R	N	G	V	.	.	.	.	.	.	.	.	.	.	.	S	D	R	L	E	L	Y	L	P	K	D	Q	P	E	.	.	.	.	.	.	.	.	E	M	K	A	D	V	V	V	A	N	I	L	A	G	P	L	.	.	.	.	.	.	R	E	L	A	P	L	I	S	V	L	P	V	S	G	G	L	L	G	L	S	G
Query Conservation						.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.																	.	.	.	.	.	.																				.	.
Template Conservation																																																																																.	.
Template Sequence		Q	W	P	M	P	L	P	G	C	H	R	L	L	L	D	R	V	T	L	D	L	W	F	G	D	I	N	E	L	I	S	Q	L	D	D	S	L	N	Q	K	V	D	A	W	F	L	D	G	F	A	P	A	K	N	P	D	M	W	T	Q	N	L	F	N	A	M	A	R	L	A	R	P	G	G	T	L	A	T	.	.
Template Known Secondary structure		T				S		S																	S						G	G	G	S		G	G	G	T	T									S	S		T	T	T		G	G	G																						.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		I	L	A	S	Q	A	E	S	V	C	E	A	Y	A	D	.	S	F	A	L	D	P	V
Query Conservation																	.
Alig confidence		.	.														.
Template Conservation		.	.
Template Sequence		.	.	F	T	S	A	G	F	V	R	R	G	L	Q	E	A	G	F	T	M	Q	K	R
Template Known Secondary structure		.	.	S														T
Template Predicted Secondary structure		.	.
Template SS confidence
				230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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