Job Description P0A8T1 Confidence 99.24% Date Thu Jan 5 11:08:40 GMT 2012 Rank 243 Aligned Residues 149 % Identity 15% Template c2q41D_ PDB info PDB header:transferase Chain: D: PDB Molecule:spermidine synthase 1; PDBTitle: ensemble refinement of the protein crystal structure of spermidine2 synthase from arabidopsis thaliana gene at1g23820 Resolution 2.70 Å

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		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.		.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.				.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																																				.																												.	.	.												.	.	.	.
Query SS confidence																																				.																												.	.	.												.	.	.	.
Query Sequence		T	S	L	C	L	Q	W	L	D	S	L	D	L	T	G	K	T	V	I	D	F	G	C	G	S	G	I	L	A	I	A	A	L	K	.	L	G	A	A	K	A	I	G	I	D	I	D	P	Q	A	I	Q	A	S	R	D	N	A	E	R	N	G	.	.	.	V	S	D	R	L	E	L	Y	L	P	K	.	.	.	.
Query Conservation																																				.																												.	.	.												.	.	.	.
Alig confidence																																				.																												.	.	.												.	.	.	.
Template Conservation
Template Sequence		Q	E	X	I	T	H	L	P	L	C	S	I	P	N	P	K	K	V	L	V	I	G	G	G	D	G	G	V	L	R	E	V	A	R	H	A	S	I	E	Q	I	D	X	C	E	I	D	K	X	V	V	D	V	S	K	Q	F	F	P	D	V	A	I	G	Y	E	D	P	R	V	N	L	V	I	G	D	G	V	A	F
Template Known Secondary structure						T					T	T	S	S	S								S		S	S	S							T	T		T	T																						T	T	T	G	G	G	T	T		T	T						S
Template Predicted Secondary structure
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
			217	.	.	220	.	.	.	.	.	.	.	.	.						230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.				.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure		.														.	.	.	.	.								.	.																				.	.	.									.																				.	.
Query SS confidence		.														.	.	.	.	.								.	.																				.	.	.									.																				.	.
Query Sequence		.	D	Q	P	E	E	M	K	A	D	V	V	V	A	.	.	.	.	.	N	I	L	A	G	P	L	.	.	R	E	L	A	P	L	I	S	V	L	P	V	S	G	G	L	L	G	L	.	.	.	S	G	I	L	A	S	Q	A	.	E	S	V	C	E	A	Y	A	D	S	F	A	L	D	P	V	V	E	K	.	.
Query Conservation		.														.	.	.	.	.								.	.																				.	.	.									.																				.	.
Alig confidence		.														.	.	.	.	.								.	.																				.	.	.									.																				.	.
Template Conservation
Template Sequence		L	K	N	A	A	E	G	S	Y	D	A	V	I	V	D	S	S	D	P	I	G	P	A	K	E	L	F	E	K	P	F	F	Q	S	V	A	R	A	L	R	P	G	G	V	V	C	T	Q	A	E	S	L	W	L	H	X	D	I	I	E	D	I	V	S	N	C	R	E	I	F	K	G	S	V	N	Y	A	W	T	S
Template Known Secondary structure				S	S		S	S												S	S	S	G	G	G	G	G	G	S																								T	T	T																	S	S
Template Predicted Secondary structure
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
								283	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	E	E	W	C	R	I	T	G	R	K	N
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.
Template Conservation
Template Sequence		V	P	T	Y	P	S	G	V	I	G	F	X	L	C	S	T	E
Template Known Secondary structure			T	T	S	G	G	G										S
Template Predicted Secondary structure
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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