Job Description P0A8T1 Confidence 99.39% Date Thu Jan 5 11:08:40 GMT 2012 Rank 220 Aligned Residues 147 % Identity 14% Template c2pssC_ PDB info PDB header:transferase Chain: C: PDB Molecule:spermidine synthase; PDBTitle: the structure of plasmodium falciparum spermidine synthase in its apo-2 form Resolution 2.20 Å

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		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.		.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.				.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																																							.																												.	.	.												.
Query SS confidence																																							.																												.	.	.												.
Query Sequence		H	P	T	T	S	L	C	L	Q	W	L	D	S	L	D	L	T	G	K	T	V	I	D	F	G	C	G	S	G	I	L	A	I	A	A	L	K	.	L	G	A	A	K	A	I	G	I	D	I	D	P	Q	A	I	Q	A	S	R	D	N	A	E	R	N	G	.	.	.	V	S	D	R	L	E	L	Y	L	P	K	.
Query Conservation																																							.																												.	.	.												.
Alig confidence																																							.																												.	.	.												.
Template Conservation
Template Sequence		F	A	Y	H	E	M	M	T	H	V	P	M	T	V	S	K	E	P	K	N	V	L	V	V	G	G	G	D	G	G	I	I	R	E	L	C	K	Y	K	S	V	E	N	I	D	I	C	E	I	D	E	T	V	I	E	V	S	K	I	Y	F	K	N	I	S	C	G	Y	E	D	K	R	V	N	V	F	I	E	D	A
Template Known Secondary structure																S	S	S										T	T									T		T	T									S																	G	G	G	G	S	T	T						S
Template Predicted Secondary structure
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
					217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.					.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure		.	.	.																																										.	.	.	.																										.	.	.	.	.	.	.
Query SS confidence		.	.	.																																										.	.	.	.																										.	.	.	.	.	.	.
Query Sequence		.	.	.	D	Q	P	E	E	M	K	A	D	V	V	V	A	N	I	L	A	G	P	L	R	E	L	A	P	L	I	S	V	L	P	V	S	G	G	L	L	G	L	S	G	.	.	.	.	I	L	A	S	Q	A	E	S	V	C	E	A	Y	A	D	S	F	A	L	D	P	V	V	E	K	.	.	.	.	.	.	.
Query Conservation		.	.	.																																										.	.	.	.																										.	.	.	.	.	.	.
Alig confidence		.	.	.															.	.	.	.	.																							.	.	.	.																										.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.
Template Sequence		S	K	F	L	E	N	V	T	N	T	Y	D	V	I	I	V	D	.	.	.	.	.	S	S	N	F	Y	E	K	I	Y	N	A	L	K	P	N	G	Y	C	V	A	Q	C	E	S	L	W	I	H	V	G	T	I	K	N	M	I	G	Y	A	K	K	L	F	K	K	V	E	Y	A	N	I	S	I	P	T	Y	P	C
Template Known Secondary structure						T	T			S									.	.	.	.	.																									T	T	T														T	T		S										T	T	S	G	G
Template Predicted Secondary structure																			.	.	.	.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.						.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		283	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	W	C	R	I	T	G	R	K	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	C	I	G	I	L	C	C	S	K	T
Template Known Secondary structure		G									S	S
Template Predicted Secondary structure
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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