Job Description P0A8T1 Confidence 96.67% Date Thu Jan 5 11:08:40 GMT 2012 Rank 318 Aligned Residues 100 % Identity 20% Template c2hwkA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:helicase nsp2; PDBTitle: crystal structure of venezuelan equine encephalitis2 alphavirus nsp2 protease domain Resolution 2.45 Å

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		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		T	G	K	T	V	I	D	F	G	C	G	S	G	I	L	A	I	A	A	L	K	L	G	A	A	K	A	I	G	I	D	I	D	P	Q	A	I	Q	A	S	R	D	N	A	E	R	N	G	V	S	D	R	L	E	L	Y	L	P	K	D	Q	P	E	E	M	K	A	D	V	V	V	A	N	I	L	A	G	P	.	.
Query Conservation																																																																																.	.
Alig confidence													.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Template Conservation													.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	G	R	T	V	L	V	V	G	E	K	.	.	.	.	.	.	.	.	L	S	V	P	G	K	M	V	D	W	L	S	D	R	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	T	F	R	A	R	L	D	L	G	I	P	G	D	V	P	K	Y	D	I	I	F	V	N	V	R	T	P	Y	K	Y
Template Known Secondary structure		S		S							S		.	.	.	.	.	.	.	.				T	T	S							S	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T		S					G	G	G		S		T	T	S																S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		630	.	.	.	.	.	.	.	.	.	640									.	.	.	.	.	.	.	.	.	650	.	.	.	.	.															.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.
														236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.			.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	L	R	E	L	A	P	L	I	S	V	L	P	V	S	G	G	L	L	G	L	S	.	.	G	I	L	A	S	Q	A	E	S	V	C	E	A	Y	A	D	S	F	A	L	D	P	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation
Template Sequence		H	H	Y	Q	Q	C	E	D	H	A	I	K	L	S	M	L	T	K	K	A	C	L	H	L	N	P	G	G	T	C	V	S	I	G	Y	G	Y	A	D	R	A	S	E	S	I	I	G	A	I	A	R	Q	F	K	F	S	R	V
Template Known Secondary structure																	T					G	G	G																S												T	T
Template Predicted Secondary structure
Template SS confidence
		688	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions