Job Description P0A8T1 Confidence 99.30% Date Thu Jan 5 11:08:40 GMT 2012 Rank 237 Aligned Residues 154 % Identity 11% Template c2cmgA_ PDB info PDB header:transferase Chain: A: PDB Molecule:spermidine synthase; PDBTitle: crystal structure of spermidine synthase from helicobacter2 pylori Resolution 2.0 Å

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		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		D	E	N	A	V	N	V	M	L	D	P	G	L	A	F	G	T	G	T	H	P	T	T	S	L	C	L	Q	W	L	D	S	L	D	L	T	G	K	T	V	I	D	F	G	C	G	S	G	I	L	A	I	A	A	L	K	L	G	A	A	K	A	I	G	I	D	I	D	P	Q	A	I	Q	A	S	R	D	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																																																												.																			.	.	.
Template Conservation																																																												.
Template Sequence		K	D	F	G	E	I	A	M	L	N	R	Q	L	L	F	K	N	F	L	H	I	E	S	E	L	L	A	H	M	G	G	C	T	K	K	E	L	K	E	V	L	I	V	D	G	F	D	L	E	L	A	H	Q	L	F	K	Y	D	.	T	H	I	D	F	V	Q	A	D	E	K	I	L	D	S	F	I	S	F	F	P
Template Known Secondary structure		T	T	T							T	T					G	G	G	T													T	T	S	S									S	S										T	T	S	S	.								S						G	G	G	T	T	T	S	T
Template Predicted Secondary structure																																																												.
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.				.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.									.
Query SS confidence																																																										.	.	.									.
Query Sequence		N	A	E	R	N	G	V	S	D	R	L	E	L	Y	L	P	K	D	Q	P	E	E	M	K	A	D	V	V	V	A	N	I	L	A	G	P	L	R	E	L	A	P	L	I	S	V	L	P	V	S	G	G	L	L	G	L	.	.	.	S	G	I	L	A	S	Q	A	.	E	S	V	C	E	A	Y	A	D	S	F	A
Query Conservation																																																										.	.	.									.
Alig confidence																																					.	.																				.	.	.									.
Template Conservation																																					.	.
Template Sequence		H	F	H	E	V	K	N	N	K	N	F	T	H	A	K	Q	L	L	D	L	D	I	K	K	Y	D	L	I	F	C	L	Q	E	P	D	.	.	I	H	R	I	D	G	L	K	R	M	L	K	E	D	G	V	F	I	S	V	A	K	H	P	L	L	E	H	V	S	M	Q	N	A	L	K	N	M	G	G	V	F	S
Template Known Secondary structure		T						T		T	T					S	S	G	G	G	S											S	S				.	.									T	T														T	T	T														T	T		S
Template Predicted Secondary structure																																					.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150			.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		276	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	P	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	M	P
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions