Job Description P39342 Confidence 99.98% Date Thu Jan 5 11:59:31 GMT 2012 Rank 3 Aligned Residues 357 % Identity 16% Template d1e9ra_ SCOP info P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases RecA protein-like (ATPase-domain) Resolution 2.4

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	P	L	L	I	A	R	T	P	D	T	E	L	F	L	L	P	G	M	A	N	R	H	G	L	I	T	G	A	T	G	T	G	K	T	V	T	L	Q	K	L	A	E	S	L	S	E	I	G	V	P	V	F	M	A	D	V	K	G	D	L	T	G	V	A	Q	A	G	T	V	S	E	K	L	L	A	R	L	K
Query Conservation
Alig confidence									.	.	.	.	.																																																														.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.																																																														.	.	.	.	.	.	.
Template Sequence		A	K	Q	V	T	V	A	.	.	.	.	.	G	V	P	M	P	R	D	A	E	P	R	H	L	L	V	N	G	A	T	G	T	G	K	S	V	L	L	R	E	L	A	Y	T	G	L	L	R	G	D	R	M	V	I	V	D	P	N	G	D	M	L	S	K	F	G	R	D	K	D	I	I	.	.	.	.	.	.	.
Template Known Secondary structure		S						T	.	.	.	.	.	T					G	G	G	G	G	G								T	T	S	S															T	T									T	T									T	T				.	.	.	.	.	.	.
Template Predicted Secondary structure									.	.	.	.	.																																																														.	.	.	.	.	.	.
Template SS confidence
		107	.	.	110	.	.	.						.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	G	V	N	D	W	Q	P	H	A	N	P	V	V	V	W	D	I	F	G	E	K	G	H	P	V	R	A	T	V	S	D	L	G	P	L	L	L	A	R	L	L	N	L	N	D	V	Q	S	G	V	L	N	I	I	F	R	I	A	D	D	Q	G	L	L	L	L	D	F	K	D	L	R	A	I	T	Q	Y	I
Query Conservation
Alig confidence		.	.	.																																																													.	.
Template Conservation		.	.	.																																																													.	.
Template Sequence		.	.	.	L	N	P	Y	D	Q	R	T	K	G	W	S	F	F	N	E	I	R	N	D	Y	D	W	Q	R	Y	A	L	S	V	V	P	R	G	K	T	D	E	A	E	E	W	A	S	Y	G	R	L	L	L	R	E	T	A	K	K	L	A	L	I	.	.	G	T	P	S	M	R	E	L	F	H	W	T	T	I	A
Template Known Secondary structure		.	.	.			T	T	B	T	T						G	G	G	G			S	T	T										S		B		S	S																								T	.	.	T													T	S
Template Predicted Secondary structure		.	.	.																																																													.	.
Template SS confidence
					175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.							170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.																																.
Query SS confidence										.	.	.	.	.	.																																.
Query Sequence		G	D	N	A	K	S	F	Q	.	.	.	.	.	.	N	Q	Y	G	N	I	S	S	A	S	V	G	A	I	Q	R	G	L	L	S	L	E	Q	Q	G	A	A	H	F	F	G	.	E	P	M	L	D	I	K	D	W	M	R	T	D	A	N	G	K	G	V	I	N	I	L	S	A	E	K	L	Y	Q	M	P	K	L
Query Conservation										.	.	.	.	.	.																																.
Alig confidence										.	.	.	.	.	.																																.													.	.	.	.	.
Template Conservation																																																												.	.	.	.	.
Template Sequence		T	F	D	D	L	R	G	F	L	E	G	T	L	A	E	S	L	F	A	G	S	N	E	A	S	K	A	L	T	S	A	R	F	V	L	S	D	K	L	P	E	H	V	T	M	P	D	G	D	F	S	I	R	S	W	L	E	D	.	.	.	.	.	P	N	G	G	N	L	F	I	T	W	R	E	D	M	G	P	A
Template Known Secondary structure											T	T	S	T					T		S	S																		S						S														.	.	.	.	.	T	T										G	G	G
Template Predicted Secondary structure																																																												.	.	.	.	.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.						.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		Y	A	A	S	L	L	W	M	L	S	E	L	Y	E	Q	L	P	E	A	G	D	L	E	K	P	K	L	V	F	F	F	D	E	A	H	L	L	F	N	D	A	P	Q	V	L	L	D	K	I	E	Q	V	I	R	L	I	R	S	K	G	V	G	V	W	F	V	S	Q	N	P	S	D	I	P	D	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.																												.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.
Template Sequence		L	R	P	L	I	S	A	W	V	D	V	V	C	T	S	I	L	S	L	P	E	E	P	K	R	R	L	W	L	F	I	D	E	L	A	S	L	E	K	L	A	S	.	.	.	.	.	.	L	A	D	A	L	T	K	G	R	K	A	G	L	R	V	V	A	G	L	Q	S	T	S	Q	L	D	D	V	Y	G	V	K
Template Known Secondary structure																	G	G	G	S				T	T								S		G	G	G	S		B		S	S	.	.	.	.	.	.									T	T	T	T								S
Template Predicted Secondary structure																																												.	.	.	.	.	.
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.							.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
					310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.													.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure		.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	N	V	L	G	Q	L	G	N	R	V	Q	H	A	L	R	A	F	T	P	K	D	Q	K	A	V	K	A	A	A	Q	T	M	R	A	N	P	A	F	D	.	.	.	.	.	.	.	.	.	.	.	.	T	E	K	A	I	Q	E	L	G	T	G	E	A	L	I	S	F	L	D	A	K	G	S	P	S	V
Query Conservation		.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.															.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation																			.	.	.																																																								.
Template Sequence		E	A	Q	T	L	R	A	S	F	R	S	L	V	V	L	G	G	.	.	.	S	R	T	D	P	K	T	N	E	D	M	S	L	S	L	G	E	H	E	V	E	R	D	R	A	L	E	R	V	R	E	R	V	V	M	P	A	E	I	A	N	L	P	D	L	T	A	Y	V	G	F	A	G	N	R	.	P	I	A	K
Template Known Secondary structure								T	T										.	.	.		T	T																														S	S							T			T	T							S	S	S		.
Template Predicted Secondary structure																			.	.	.																																																								.
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.				.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470		.	.	.	.
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	R	A	M	V	I	A	P	C	S	R	M	G	P	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	P	L	E	I	K	Q	F	A	N	R	Q	P	A	F	V
Template Known Secondary structure												S	S		S
Template Predicted Secondary structure
Template SS confidence
		488	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions