Job Description P39342 Confidence 100.00% Date Thu Jan 5 11:59:31 GMT 2012 Rank 2 Aligned Residues 273 % Identity 21% Template c2iuuE_ PDB info PDB header:membrane protein Chain: E: PDB Molecule:dna translocase ftsk; PDBTitle: p. aeruginosa ftsk motor domain, hexamer Resolution 2.9 Å

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		1	.	.	.	.	.	.	.	.	10	.	.		.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.					.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure														.																																								.	.	.	.
Query SS confidence														.																																								.	.	.	.
Query Sequence		M	S	E	P	L	L	I	A	R	T	P	D	.	T	E	L	F	L	L	P	G	M	A	N	R	H	G	L	I	T	G	A	T	G	T	G	K	T	V	T	L	Q	K	L	A	E	S	L	S	E	I	G	.	.	.	.	V	P	V	F	M	A	D	V	K	G	D	L	T	G	V	A	Q	A	G	T	V	S	E	K
Query Conservation														.																																								.	.	.	.
Alig confidence														.												.																												.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	T	V	P	L	A	L	G	H	D	I	G	G	R	P	I	I	T	D	L	A	K	M	P	.	H	L	L	V	A	G	T	T	G	S	G	K	S	V	G	V	N	A	M	L	L	S	I	L	F	K	S	T	P	S	E	A	R	L	I	M	I	D	P	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S	S								T	T	S							G	G	G	S		.	S							T	T	S	S														T	T			T	T	T								S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																										.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		437	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460		.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	A	R	L	K	N	I	G	V	N	D	W	Q	P	H	A	N	P	V	V	V	W	D	I	F	G	E	K	G	H	P	V	R	A	T	V	S	D	L	G	P	L	L	L	A	R	L	L	N	L	N	D	V	Q	S	G	V	L	N	I	I	F	R	I	A	D	D	Q	G	L	L	L	L	D	F	K	D	L	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	L	E	L	S	I	Y	E	G	I	P	H	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	C	P	V	V	T	D	M	K	E	A	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	G	G	G	G	G	T	T		T	T	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S		B		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																											501	.	.	.	.	.	.	.	.	510	.	.	.															.	.	.	.	.	.	520	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	T	Q	Y	I	G	D	N	A	K	S	F	Q	N	Q	Y	G	N	I	S	S	A	S	V	G	A	I	Q	R	G	L	L	S	L	E	Q	Q	G	A	A	H	F	F	G	E	P	M	L	D	I	K	D	W	M	R	T	D	A	N	G	K	G	V	I	N	I	L	S	A	E	K	L	Y	Q	M	P	K	L	Y
Query Conservation
Alig confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	A	L	R	W	S	V	A	E	M	E	R	R	Y	R	L	M	A	A	M	G	V	R	N	L	A	G	F	N	R	K	V	K	D	A	E	E	A	G	T	P	L	T	D	P	L	F	R	R	E	S	P	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																						T		S	S														T	T				B		T	T				S	S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		526	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.			.	.	.	310	.	.	.
Predicted Secondary structure																																																																									.	.
Query SS confidence																																																																									.	.
Query Sequence		A	A	S	L	L	W	M	L	S	E	L	Y	E	Q	L	P	E	A	G	D	L	E	K	P	K	L	V	F	F	F	D	E	A	H	L	L	F	N	D	A	P	Q	V	L	L	D	K	I	E	Q	V	I	R	L	I	R	S	K	G	V	G	V	W	F	V	S	Q	N	P	S	D	.	.	I	P	D	N	V	L	G
Query Conservation																																																																									.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																									.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	P	P	Q	L	S	T	L	P	T	I	V	V	V	V	D	E	F	A	D	M	M	M	I	V	G	K	K	V	E	E	L	I	A	R	I	A	Q	K	A	R	A	A	G	I	H	L	I	L	A	T	Q	R	P	S	V	D	V	I	T	G	L	I	K	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				B												T	T																								G	G	G	T								S				T	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	G	N	R	V	Q	H	A	L	R	A	F	T	P	K	D	Q	K	A	V	K	A	A	A	Q	T	M	R	A	N	P	A	F	D	T	E	K	A	I	Q	E	L	G	T	G	E	A	L	I	S	F	L	D	A	K	G	S	P	S	V	V	E	R	A	M	V	I	A	P	C	S	R	M	G	P	V	T	E	D
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.											.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.											.	.	.	.	.	.	.	.	.	.
Template Sequence		N	I	P	T	R	I	A	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	V	S	S	K	I	D	S	R	T	I	L	D	Q	G	G	A	E	Q	L	L	G	H	G	D	M	L	Y	L	P	P	G	T	G	.	L	P	I	R	V	H	G	A	F	V	.	.	.	.	.	.	.	.	.	.	S	D	D
Template Known Secondary structure		T								.	.	.	.	.	.	.	.	.	.	.	.	.	.			S										S	S	S		G	G	G			S	T	T							S	S	S	S	.									B		.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.											.	.	.	.	.	.	.	.	.	.
Template SS confidence
		645	.	.	.	.	650	.	.															.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.		.	.	.	690	.	.	.	.	.	.											.	.	.
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	N	G	L	I	N	H	S	P	V	Y	G	K	Y	E	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	V	H	R	V	V	E	A	W	K	L	R	G	A	P	D	Y
Template Known Secondary structure													T
Template Predicted Secondary structure
Template SS confidence
		700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions