Job Description P39342 Confidence 96.57% Date Thu Jan 5 11:59:31 GMT 2012 Rank 55 Aligned Residues 174 % Identity 18% Template c2hydB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:abc transporter homolog; PDBTitle: multidrug abc transporter sav1866 Resolution 3.00 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	R	H	G	L	I	T	G	A	T	G	T	G	K	T	V	T	L	Q	K	L	A	E	S	L	S	E	I	G	V	P	V	F	M	A	D	V	K	G	D	L	T	G	V	A	Q	A	G	T	V	S	E	K	L	L	A	R	L	K	N	I	G	V	N	D	W	Q	P	H	A	N	P	V	V	V	W	D	I	F	G
Query Conservation
Alig confidence																					.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	E	T	V	A	F	V	G	M	S	G	G	G	K	S	T	L	I	N	.	L	I	P	R	F	Y	D	V	T	S	G	Q	I	L	I	D	G	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T								S	T	T	S	S						T	.	T	T	T	T	S	S			S							T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																					.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.		.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	G	H	P	V	R	A	T	V	S	D	L	G	P	L	L	L	A	R	L	L	N	L	N	D	V	Q	S	G	V	L	N	I	I	F	R	I	A	D	D	Q	G	L	L	L	L	D	F	K	D	L	R	A	I	T	Q	Y	I	G	D	N	A	K	S	F	Q	N	Q	Y	G	N	I	S	S	A	S	V	G	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	N	I	K	D	F	L	T	G	S	L	R	N	Q	I	G	L	V	Q	Q	D	N	I	L	F	S	D	T	V	K	E	N	I	L	L	G	R	P	T	A	T	D	E	E	V	V	E	A	A	K	M	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.		G	G	G	S								T						S	S					S	S	B						G	G	G		S	S													T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
										404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Q	R	G	L	L	S	L	E	Q	Q	G	A	A	H	F	F	G	E	P	M	L	D	I	K	D	W	M	R	T	D	A	N	G	K	G	V	I	N	I	L	S	A	E	K	L	Y	Q	M	P	K	L	Y	A	A	S	L	L	W	M	L	S	E	L	Y	E	Q	L	P	E	A	G	D	L	E	K	P	K	L	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	H	D	F	I	M	N	L	P	Q	G	Y	D	T	E	V	G	E	R	G	V	K	L	S	G	G	Q	K	Q	R	L	S	I	A	R	I	F	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	P	P	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T							T	S	T	T	G	G	G		B			G	G	G	T	T	S																	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																								455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.															.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	F	F	D	E	A	H	L	L	F	N	D	A	P	Q	V	L	L	D	K	I	E	Q	V	I	R	L	I	R	S	K	G	V	G	V	W	F	V	S	Q	N	P	S	D	I	P
Query Conservation
Alig confidence								.	.	.																						.
Template Conservation								.	.	.																						.
Template Sequence		L	I	L	D	E	A	.	.	.	T	S	A	L	D	L	E	S	E	S	I	I	Q	E	A	L	D	V	L	S	K	.	D	R	T	T	L	I	V	A	H	R	L	S	T	I	T
Template Known Secondary structure						S	T	.	.	.	T	T	T																	T	T	.	T	S							S	S	G	G	G	T	T
Template Predicted Secondary structure								.	.	.																						.
Template SS confidence
		499	500	.	.	.	.				.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.		.	.	.	.	530	.	.	.	.	.	.	.	.	.	540

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions