Job Description P0A9J8 Confidence 91.88% Date Thu Jan 5 11:10:31 GMT 2012 Rank 47 Aligned Residues 176 % Identity 13% Template c3tmgA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:glycine betaine, l-proline abc transporter, PDBTitle: crystal structure of glycine betaine, l-proline abc transporter,2 glycine/betaine/l-proline-binding protein (prox) from borrelia3 burgdorferi Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.						.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.
Query SS confidence																						.	.	.	.	.
Query Sequence		H	S	A	R	I	A	F	L	G	P	K	G	S	Y	S	H	L	A	A	R	.	.	.	.	.	Q	Y	A	A	R	H	F	E	Q	F	I	E	S	G	C	A	K	F	A	D	I	F	N	Q	V	E	T	G	Q	A	D	Y	A	V	V	P	I	E	N	T	S	S	G	A	I	N	D	V	Y	D	L	L	Q	H	T
Query Conservation																						.	.	.	.	.
Alig confidence										.	.	.	.									.	.	.	.	.																.																										.	.	.	.
Template Conservation										.	.	.	.																													.																										.	.	.	.
Template Sequence		K	S	V	K	I	G	Y	V	.	.	.	.	N	W	G	G	E	T	A	A	T	N	V	L	K	V	V	F	E	K	M	G	Y	N	A	E	I	F	S	V	.	T	T	S	I	M	Y	Q	Y	L	A	S	G	K	I	D	G	T	V	S	S	W	V	P	T	A	.	.	.	.	D	K	F	Y	Y	E	K	L	K	T
Template Known Secondary structure										.	.	.	.																			T	T									.											T	T	S	S	S								T	T	T	.	.	.	.	T								G	G
Template Predicted Secondary structure										.	.	.	.																													.																										.	.	.	.
Template SS confidence
		26	.	.	.	30	.	.	.					.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.					.	.	.	90	.	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.															.	.	.	.	.	220	.	.	.	.				.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Query Sequence		S	L	S	I	V	G	E	M	T	L	T	I	D	H	C	L	L	V	S	G	T	T	D	L	S	T	I	N	T	V	Y	S	H	P	Q	P	F	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	C	S	K	F	L	N	R	Y	P	.	.	.	H	W	K	I	E	Y	T	E	S	T	S	A	A	M	E
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Conservation
Template Sequence		K	F	V	D	L	G	A	N	Y	E	G	T	I	Q	G	F	V	V	P	S	Y	V	P	I	S	S	I	S	E	L	K	G	K	G	D	K	F	K	N	K	M	I	G	I	D	A	G	A	G	T	Q	I	V	T	E	Q	A	L	N	Y	Y	G	L	S	K	E	Y	E	L	V	P	S	S	E	S	V	M	L	A	S
Template Known Secondary structure		G																			T	T	S				B	G	G	G	G	T	T		G	G	G	G	T	T						S	T	T														T	T		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.				.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																.	.	.
Query SS confidence																.	.	.
Query Sequence		K	V	A	Q	A	K	S	P	H	V	A	A	L	G	.	.	.	S	E	A	G	G	T	L	Y	G	L	Q	V	L	E	R	I	E	A	N	Q	R	Q	N	F	T	R	F	V	V	L	A	R	K
Query Conservation																.	.	.
Alig confidence																.	.	.
Template Conservation
Template Sequence		L	D	S	S	I	K	R	N	E	W	I	L	V	P	L	W	K	P	H	W	A	F	S	R	Y	D	I	K	F	L	D	D	P	D	L	I	M	G	G	I	E	S	V	H	T	L	V	R	L	G
Template Known Secondary structure								T	T										S		T					S						B		T	T		T	T		S	S									T	T
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions