Job Description P0A9J8 Confidence 94.06% Date Thu Jan 5 11:10:31 GMT 2012 Rank 40 Aligned Residues 181 % Identity 17% Template c3l6gA_ PDB info PDB header:glycine betaine-binding protein Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding PDBTitle: crystal structure of lactococcal opuac in its open conformation Resolution 1.90 Å

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		101	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		P	H	S	A	R	I	A	F	L	G	P	K	G	.	S	Y	S	H	L	A	A	R	Q	Y	A	A	R	H	F	E	Q	F	I	E	S	G	C	A	K	F	A	D	I	F	N	Q	V	E	T	G	Q	A	D	Y	A	V	V	P	I	E	N	T	S	S	G	A	I	N	D	V	Y	D	L	L	Q	H	T	S	L	S
Query Conservation															.
Alig confidence															.																								.																																.	.	.	.
Template Conservation																																							.																																.	.	.	.
Template Sequence		D	K	K	V	D	L	V	Y	M	N	W	D	S	E	V	A	S	I	N	V	L	T	Q	A	M	K	E	H	G	F	D	V	K	T	T	A	L	.	D	N	A	V	A	W	Q	T	V	A	N	G	Q	A	D	G	M	V	S	A	W	L	P	N	T	H	K	T	Q	W	Q	.	.	.	.	K	Y	G	K	S	V	D
Template Known Secondary structure											S																		T	T									.											T	T	S	S	S								T	T	T	T						.	.	.	.			G	G	G
Template Predicted Secondary structure																																							.																																.	.	.	.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.		.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.					.	.	390	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.												.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.							.	.	.	.	.	.	240	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.
Query Sequence		I	V	G	E	M	T	L	T	I	D	H	C	L	L	V	S	G	T	T	D	L	S	T	I	N	T	V	.	.	.	.	.	.	.	.	.	.	.	Y	S	H	P	Q	P	F	Q	Q	C	S	K	F	L	N	R	Y	P	H	W	K	I	E	Y	T	E	S	.	.	.	.	.	.	T	S	A	A	M	E	K	V	A
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	G	P	N	L	K	G	A	K	V	G	F	V	V	P	S	Y	M	N	V	N	S	I	E	D	L	T	N	Q	A	N	K	T	I	T	G	I	E	P	G	A	G	V	M	A	A	S	E	K	T	L	N	S	Y	D	N	L	K	D	W	K	L	V	P	S	S	S	G	A	M	T	V	A	L	G	E	A	I	K
Template Known Secondary structure																		T	T	S				B	G	G	G		S	S	G	G	G	G							T	T												T	T		G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	K	S	P	H	V	A	A	L	G	S	E	A	G	G	T	L	Y	G	L	Q	V	L	E	R	I	E	A	N	Q	R	Q	N	F	T	R	F	V	V	L	A	R	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	H	K	D	I	V	I	T	G	W	S	P	H	W	M	F	N	K	Y	D	L	K	Y	L	A	D	P	K	G	T	M	G	T	S	E	N	I	N	T	I	V	R	K	G
Template Known Secondary structure		T	T										S		T					S						B		T	T		T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions