Job Description P0A9J8 Confidence 45.42% Date Thu Jan 5 11:10:31 GMT 2012 Rank 89 Aligned Residues 129 % Identity 12% Template c1j8yF_ PDB info PDB header:signaling protein Chain: F: PDB Molecule:signal recognition 54 kda protein; PDBTitle: signal recognition particle conserved gtpase domain from a.2 ambivalens t112a mutant Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		L	L	A	L	R	E	K	I	S	A	L	D	E	K	L	L	A	L	L	A	E	R	R	E	L	A	V	E	V	G	K	A	K	L	L	S	H	R	P	V	R	D	I	D	R	E	R	D	L	L	E	R	L	I	T	L	G	K	A	H	H	L	D	A	.	H	Y	I	T	R	L	F	Q	L	I	I	E	D	S	V
Query Conservation																																																																		.
Alig confidence																																									.	.	.																							.
Template Conservation																																									.	.	.
Template Sequence		L	D	N	L	R	D	T	V	R	K	F	L	T	G	S	S	S	Y	D	K	A	V	E	D	F	I	K	E	L	Q	K	S	L	I	S	A	D	V	N	.	.	.	V	K	L	V	F	S	L	T	N	K	I	K	E	R	L	K	N	E	K	P	P	T	Y	I	E	R	R	E	W	F	I	K	I	V	Y	D	E	L
Template Known Secondary structure														S			S																				T	T			.	.	.																						T	T
Template Predicted Secondary structure																																									.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.				.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	Q	Q	A	L	L	Q	Q	H	L	N	K	I	N	P	H	S	A	R	I	A	F	L	G	P	K	G	S	Y	S	H	L	A	A	R	Q	Y	A	A	R	H	F	E	Q	F	I	E	S	G	C	A	K	F
Query Conservation
Alig confidence																																								.
Template Conservation																																								.
Template Sequence		S	N	L	F	G	G	D	K	E	P	K	V	I	P	D	K	I	P	Y	V	I	M	L	V	G	V	Q	G	T	T	A	G	K	L	A	Y	F	Y	.	K	K	K	G	F	K	V	G	L	V	G	A	D	V	Y
Template Known Secondary structure					T	T		S						S		S	S	S	S								S													.			T	T											S
Template Predicted Secondary structure																																								.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.		.	120	.	.	.	.	.	.	.	.	.	130	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions