Job Description P33913 Confidence 100.00% Date Thu Jan 5 11:52:42 GMT 2012 Rank 21 Aligned Residues 222 % Identity 19% Template c3o6pA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:peptide abc transporter, peptide-binding protein; PDBTitle: crystal structure of peptide abc transporter, peptide-binding protein Resolution 1.65 Å

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		304	.	.	.	.	.	310	.	.	.	.			.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		A	Q	D	T	R	W	L	A	F	N	I	.	.	Q	R	P	V	F	S	D	R	R	V	R	E	A	I	T	L	A	F	D	F	E	W	M	N	K	A	L	F	Y	N	A	W	S	R	T	N	S	Y	F	Q	N	T	E	Y	A	A	R	N	Y	P	D	A	A	E	L	V	L	L	A	P	M	K	K	D	L	P	S
Query Conservation													.	.
Alig confidence													.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	S	T	Q	Y	X	E	L	N	Q	R	D	E	K	S	P	F	R	N	A	N	L	R	K	A	I	S	Y	S	I	D	R	K	A	L	V	E	S	I	L	G	D	G	S	I	E	P	N	G	L	V	P	A	D	X	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure														S	T	T		G	G	G											T									T	T	T		S	S		B			S	S	S	S		T	T	S		B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.			.	.	.
Predicted Secondary structure																																																																													.	.
Query SS confidence																																																																													.	.
Query Sequence		E	V	F	T	Q	I	Y	Q	P	P	V	S	K	G	D	G	Y	D	R	D	N	L	L	K	A	D	K	L	L	N	E	A	G	W	V	L	K	G	Q	Q	R	V	N	A	T	T	G	Q	P	L	S	F	E	L	L	L	P	A	S	S	N	S	Q	W	V	L	P	F	Q	H	S	L	Q	R	L	.	.	G	I	N
Query Conservation																																																																													.	.
Alig confidence		.	.																																							.	.	.	.	.	.	.	.																												.	.
Template Conservation		.	.																																							.	.	.	.	.	.	.	.
Template Sequence		.	.	D	P	S	G	G	K	D	F	A	K	E	A	G	S	Q	I	E	Y	D	T	K	K	A	K	E	Y	W	E	K	A	K	K	E	L	G	I	S	T	.	.	.	.	.	.	.	.	L	T	X	D	I	L	S	S	D	A	D	S	S	K	K	T	V	E	F	V	Q	G	S	I	Q	D	A	L	D	G	V	K
Template Known Secondary structure		.	.		S	S	S	S		B																												T		S		.	.	.	.	.	.	.	.										S																		S	T	T
Template Predicted Secondary structure		.	.																																							.	.	.	.	.	.	.	.
Template SS confidence
				358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.									.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
		460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.		530	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		M	D	I	R	K	V	D	N	S	Q	I	T	N	R	M	R	S	R	D	Y	D	M	M	P	R	V	W	R	A	M	P	W	P	S	S	D	L	Q	I	S	W	S	S	E	Y	I	N	S	T	Y	N	A	P	G	V	Q	S	P	V	I	D	S	L	I	N	Q	I	I	A	A	.	Q	G	N	K	E	K	L	L	P
Query Conservation																																																																								.
Alig confidence																																														.	.	.																								.
Template Conservation																																														.	.	.
Template Sequence		V	T	V	S	P	V	P	F	S	V	R	L	D	R	S	N	K	G	D	F	D	A	V	I	G	G	W	S	A	D	Y	A	D	P	S	S	F	L	D	L	F	A	S	D	.	.	.	N	S	Y	N	R	G	R	Y	N	N	A	E	F	D	K	F	V	K	A	A	S	S	A	D	A	T	D	P	E	K	R	W	D
Template Known Secondary structure																			T			S									S	S	S		T					G	G	G	S	T	T	.	.	.		T	T		T	T																S	T	T
Template Predicted Secondary structure																																														.	.	.
Template SS confidence
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.				.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
		539	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	R	A	L	D	R	V	L	T	W	N	Y	Y	M	L	P	M	W	Y	M	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	X	L	N	A	E	K	T	I	X	G	D	X	G	V	V	P	L	F	Q	K	S
Template Known Secondary structure													T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		505	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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