Return to main results Retrieve Phyre Job Id

Job DescriptionP39386
Confidence100.00%DateThu Jan 5 12:00:19 GMT 2012
Rank4Aligned Residues395
% Identity10%Templated1pv7a_
SCOP infoMFS general substrate transporter MFS general substrate transporter LacY-like proton/sugar symporter
Resolution3.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   16...20.........30........ .40.........50.........60.........70.........80.........90....
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Query Sequence  MALILYDFAAYLSTDLIQPGIIN. VVRDFNADVSLAPAAVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAA
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Template Sequence  WMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAP
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   10.........20.........30.........40.........50.........60.........70.........80.........
 
   95....100.........110.........120.........130.........140.........150.........160.........170....
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Query Sequence  TMFTTSMTQFLIARAIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLIAPIIGPLSGAALMHFMHWKVLFAIIA
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Template Sequence  FFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFV
Template Known Secondary structure  TTT
TTTTGGGGGTTS


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   90.........100.........110.........120.........130.........140.........150.........160.........
 
   175....180........ .190.........200.........210.........220.........230.........240.....
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Query Sequence  VMGFISFVGLLLAM. . . . . . . . . PETVKRGAVPFSAKSVLRDFRNVFCNRLFLFGAATISLSYIPMMSWVAVSPVILIDA
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Template Sequence  FWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTS
Template Known Secondary structure  SS


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   170.........180.........190.........200.........210.........220.........230.........240.........
 
   246...250.........260.........270.........280.........290.........300.........310.........320.....
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Query Sequence  GSLTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLSLLIVGNLLSPHVWLWSVLGTSLYAFGIGL
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Template Sequence  FFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFL
Template Known Secondary structure  SSS
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   250.........260.........270.........280.........290.........300.........310.........320.........
 
   326...330.........340.........350.... .....360.........370.........380.........390.........400....
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Query Sequence  IFPTLFRFTLFSNKLPKGTVSASLNMVIL. MVMSVSVEIGRWLWFNGGRLPFHLLAVVAGVIVVFTLAGLLNRVRQHQAA
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Template Sequence  LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLL
Template Known Secondary structure  S
GGGTTT
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   330.........340.........350.........360.........370.........380.........390.........400.........
 
   405....410
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Query Sequence  ELVEEQ
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Template Sequence  RRQVNE
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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