Job Description P39386 Confidence 99.96% Date Thu Jan 5 12:00:19 GMT 2012 Rank 5 Aligned Residues 380 % Identity 14% Template c2xutC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter. Resolution 3.62 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.							.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.																																	.
Query SS confidence																															.	.	.	.	.	.																																	.
Query Sequence		P	M	A	L	I	L	Y	D	F	A	A	Y	L	S	T	D	L	I	Q	P	G	I	I	N	V	V	R	D	F	.	.	.	.	.	.	N	A	D	V	S	L	A	P	A	A	V	S	L	Y	L	A	G	G	M	A	L	Q	W	L	L	G	P	L	S	D	R	I	.	G	R	R	P	V	L	I	T	G	A	L	I
Query Conservation																															.	.	.	.	.	.																																	.
Alig confidence																															.	.	.	.	.	.																																	.
Template Conservation
Template Sequence		P	Y	I	I	A	S	E	A	C	E	R	F	S	F	Y	G	M	R	N	I	L	T	P	F	L	M	T	A	L	L	L	S	I	P	E	E	L	R	G	A	V	A	K	D	V	F	H	S	F	V	I	G	V	Y	F	F	P	L	L	G	G	W	I	A	D	R	F	F	G	K	Y	N	T	I	L	W	L	S	L	I
Template Known Secondary structure		T																											S		S	S			S	S	S	T	T	T	T	T															T									T	T	S	S		S
Template Predicted Secondary structure
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.				.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure													.																																								.	.	.
Query SS confidence													.																																								.	.	.
Query Sequence		F	T	L	A	C	A	A	T	M	F	T	.	T	S	M	T	Q	F	L	I	A	R	A	I	Q	G	T	S	I	C	F	I	A	T	V	G	Y	V	T	V	Q	E	A	F	G	Q	T	K	G	I	K	.	.	.	L	M	A	I	I	T	S	I	V	L	I	A	P	I	I	G	P	L	S	G	A	A	L	M	H	F
Query Conservation													.																																								.	.	.
Alig confidence													.																																								.	.	.
Template Conservation
Template Sequence		Y	C	V	G	H	A	F	L	A	I	F	E	H	S	V	Q	G	F	Y	T	G	L	F	L	I	A	L	G	S	G	G	I	K	P	L	V	S	S	F	M	G	D	Q	F	D	Q	S	N	K	S	L	A	Q	K	A	F	D	M	F	Y	F	T	I	N	F	G	S	F	F	A	S	L	S	M	P	L	L	L	K	N
Template Known Secondary structure												T	S	S																		T	T											T		S	T	T	T	T	T																							T	S	T					T
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	H	W	K	V	L	F	A	I	I	A	V	M	G	F	I	S	F	V	G	L	L	L	A	M	P	E	T	V	K	R	G	A	V	P	F	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	G	A	A	V	A	F	G	I	P	G	V	L	M	F	V	A	T	V	F	F	W	L	G	R	K	R	Y	I	H	M	P	V	E	G	K	G	N	I	G	L	V	L	A	L	I	G	G	V	S	A	A	Y	A	L	V	N	I	P	T	L	G	I	V	A	G	L	C	C	A	M	V	L	V	M	G	F	V	G	A
Template Known Secondary structure		S																						S	S	S	S	S							T	T																			T	G	G	G	T	T	T	T		S	S																T
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
												201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	A	K	S	V	L	R	D	F	R	N	V	F	C	N	R	L	F	L	F	G	A	A	T	I	S	L	S	Y	I	P	M	M	S	W	V	A	V	S	P	V	I	L	I	D	A	G	S	L	T	T	S	Q	F	A	W	T	Q	V	P	V	F	G	A	V	I	V	A	N	A	I
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	A	S	L	Q	L	E	R	A	R	K	S	H	P	D	A	A	V	D	G	V	R	S	V	L	R	I	L	V	L	F	A	L	V	T	P	F	W	S	L	F	D	Q	K	A	S	T	W	I	L	Q	A	N	D	M	V	K	P	Q	W	F	E	P	A	M	M	Q	A	L	N	P	L	L	V	M	L	L	I	P	F
Template Known Secondary structure		G	G	G	T					S			S			S	S	S	S	T	T	T	T	T									T	T	S					T	T	T	S	S	T	T	T									S				S	S	S							T	T	S	G	G	G					G	G	G
Template Predicted Secondary structure
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		V	A	R	F	V	K	D	P	T	E	P	R	F	I	W	R	A	V	P	I	Q	L	V	G	L	S	L	L	I	V	G	N	L	L	S	P	H	V	W	L	W	S	V	L	G	T	S	L	Y	A	F	G	I	G	L	I	F	P	T	L	F	R	F	T	L	F	S	N	K	.	L	P	K	G	T	V	S	A	S	L
Query Conservation																																																																							.
Alig confidence																																																																							.
Template Conservation
Template Sequence		N	N	F	V	T	A	L	R	K	M	G	A	G	I	A	I	T	G	L	S	W	I	V	V	G	T	I	Q	L	M	M	D	G	G	S	A	L	S	I	F	W	Q	I	L	P	Y	A	L	L	T	F	G	E	V	L	V	S	A	T	G	L	E	F	A	Y	S	Q	A	P	K	A	M	K	G	T	I	M	S	F	W
Template Known Secondary structure		T	T	T									T											T	T	T	T	T	T	T	T	T	T	T	T					S																						T	T	T							T	T			T	T	T
Template Predicted Secondary structure
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	M	V	I	L	M	V	M	S	V	S	V	E	I	G	R	W	L	W	F	N	G	G	R	L	P	F	H	L	L	A	V	V	A	G	V	I	V	V	F	T	L	A	G	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L	S	V	T	V	G	N	L	W	V	L	L	A	N	V	S	V	K	S	P	T	V	T	E	Q	I	V	Q	T	G	M	S	V	T	A	F	Q	M	F	F	F	A	G	F
Template Known Secondary structure		G	G	G															T	T	S												S
Template Predicted Secondary structure
Template SS confidence
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.