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Job DescriptionP21865
Confidence60.82%DateThu Jan 5 11:38:35 GMT 2012
Rank383Aligned Residues241
% Identity19%Templatec3zq6D_
PDB info PDB header:hydrolaseChain: D: PDB Molecule:putative arsenical pump-driving atpase; PDBTitle: adp-alf4 complex of m. therm. trc40
Resolution2.11 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60.........70.........80.........90.........100......
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Query Sequence  VFFGACAGVGKTWAMLAEAQRLRAQGLDIVVGVVETHGRKDTAAMLEGLAVLPLKRQAYRGRHISEFDLDAALARRPALI
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Template Sequence  VFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP. AHSLSDSL. . EREIGHTPTKITENLYAVEIDPEVAMEEYQAKL
Template Known Secondary structure  STTSSTT



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   17..20.........30.........40.........50.. .......60 .........70.........80.........90...
 
   107..110.........120.........130.........140.........150.........160.........170.........180......
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Query Sequence  LMDELAHSNAPGSRHPKRWQDIEELLEAGIDVFTTVNVQHLESLNDVVSGVTGIQVRETVPDPFFDAADDVVLVDLPPDD
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . MLQDQMDMASMSPGIDEAAAFDQFLRYM. . . . TTDEYDIVIFDTAPTG
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   107..110.........120.........130.... .....140.........150
 
   187..190.........200.........210.........220..... ....230.........240....... ..250....
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Query Sequence  LRQRLKEGKVYIAGQAERAIEHFFRKGNLIALRELALRR. . . . . . . . . TADRVDEQMRAWRGHPGEEKVW. . . HTRDAIL
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Template Sequence  HTLRLLS. . . . FPEIMDSWVGKMIKIRRQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFK
Template Known Secondary structure  ....TTTT

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   151...... ..160.........170.........180.........190.........200.........210.........220......
 
   255....260.........270.........280........ .290.........300.........310
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Query Sequence  LCIGHNTGSEKLVRAAARLASRLGSVWHAVYVET. . PALHRLPEKKRRAILSALRLAQ
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Template Sequence  MVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPEESDCEFCNARRKLQQERLKQ
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SSTTTTT



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   227..230.........240.........250.........260.........270.........280....
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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