Job Description P21865 Confidence 96.81% Date Thu Jan 5 11:38:35 GMT 2012 Rank 81 Aligned Residues 128 % Identity 8% Template c3eeaB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:gaf domain/hd domain protein; PDBTitle: the crystal structure of the gaf domain/hd domain protein2 from geobacter sulfurreducens Resolution 1.80 Å

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		523	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.												.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Query Sequence		A	V	G	R	S	P	Q	D	I	A	A	T	S	E	Q	F	I	A	S	T	F	H	A	R	S	Q	V	L	L	P	D	D	N	G	K	L	Q	P	L	T	H	P	Q	G	.	.	.	.	.	.	.	.	.	.	.	M	T	P	W	D	D	A	I	A	Q	W	S	F	D	K	G	L	P	A	.	.	.	.	.	.
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Template Conservation
Template Sequence		S	G	L	T	D	V	D	E	V	I	K	D	L	S	R	L	L	R	K	L	V	K	T	R	W	I	A	V	Y	F	F	D	R	D	F	A	P	A	R	S	T	G	L	P	A	S	F	L	P	V	F	R	E	M	P	L	A	P	D	K	I	P	L	L	K	S	M	L	R	K	R	Q	H	L	M	L	T	D	P	G
Template Known Secondary structure				S																		S			S																		S			G	G	G									B		T	T	T											T						S		G	G
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
								586	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	G	A	G	T	D	T	L	P	G	V	P	Y	Q	I	L	P	L	K	S	G	E	K	T	Y	G	L	V	V	V	E	P	G	N	L	R	Q	L	M	I	P	E	Q	Q	R	L	L	E	T	F	T	L	L	V	A	N	A	L	E	R	L	T	L	T	A	S
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.
Template Conservation
Template Sequence		S	S	D	L	L	T	P	K	L	R	K	L	L	R	N	L	C	V	L	A	V	P	M	V	V	R	T	Q	V	I	G	A	V	F	M	A	R	T	R	D	N	P	P	F	S	D	A	E	T	A	I	I	R	D	L	V	S	H	A	A	L	V	V	S	H	M	Q	L	F	D	E
Template Known Secondary structure		G		T	T	S								T	T	T											T	T												T	T	S																													T
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions