Job Description P21865 Confidence 90.28% Date Thu Jan 5 11:38:35 GMT 2012 Rank 180 Aligned Residues 155 % Identity 12% Template c3c2wB_ PDB info PDB header:signaling protein Chain: B: PDB Molecule:bacteriophytochrome; PDBTitle: crystal structure of the photosensory core domain of p.2 aeruginosa bacteriophytochrome pabphp in the pfr state Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		511	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.														.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	T	R	H	L	Y	E	M	S	K	A	L	A	V	G	R	S	P	Q	D	I	A	A	T	S	E	Q	F	I	A	S	T	F	H	A	R	S	Q	V	L	L	P	D	D	N	G	K	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Q	P	L	T	H	P	Q	G	M	T	P	W	D	D	A	I	A	Q	W
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	T	L	N	A	Q	R	I	I	A	Q	V	Q	L	H	N	D	T	A	S	L	L	S	N	V	T	D	E	L	R	R	M	T	G	Y	D	R	V	M	A	Y	R	F	R	H	D	D	S	G	E	V	V	A	E	S	R	R	E	D	L	E	S	Y	L	G	Q	R	Y	P	A	S	D	I	P	A	Q	A	R	R	L
Template Known Secondary structure																																					S									T	T	S											T	T	S				T	T		B			G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		578	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.																																						.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	F	D	K	G	L	P	A	G	A	G	T	D	T	L	P	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	P	Y	Q	I	L	P	L	K	S	G	E	K	T	Y	G	L	V	V	V	E	P	G	N	L	R
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation																																																																																.
Template Sequence		Y	I	Q	N	P	I	R	L	I	A	D	V	A	Y	T	P	M	R	V	F	P	A	L	N	P	E	T	N	E	S	F	D	L	S	Y	S	V	L	R	S	V	S	P	I	H	C	E	Y	L	T	N	M	G	V	R	A	S	M	S	I	S	I	V	V	G	G	K	L	W	G	L	F	S	C	H	H	M	S	.	P
Template Known Secondary structure						S					S		S	S								S	S	B		T	T	T	S	S	B				T	T		S	S	B														T												T	T											S	S	.
Template Predicted Secondary structure																																																																																.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.
		621	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	M	I	P	E	Q	Q	R	L	L	E	T	F	T	L	L	V	A	N	A	L	E	R	L	T	L	T	A	S	E	E	Q	A	R	M	A	S	E	R	E	Q	I	R	N	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	I	P	Y	P	V	R	M	S	F	Q	I	F	S	Q	V	C	S	A	I	V	E	R	L	E	Q	G	R	I	A	E	L	L	R	V	S	T	E	R	R	L	A	L	A	R
Template Known Secondary structure													T	T
Template Predicted Secondary structure
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions