Job Description P21865 Confidence 81.74% Date Thu Jan 5 11:38:35 GMT 2012 Rank 231 Aligned Residues 164 % Identity 20% Template c2zamA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:vacuolar protein sorting-associating protein 4b; PDBTitle: crystal structure of mouse skd1/vps4b apo-form Resolution 3.50 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	F	G	A	C	A	G	V	G	K	T	W	A	M	L	A	E	A	Q	R	L	R	A	Q	G	L	D	I	V	V	G	V	V	E	T	H	G	R	K	D	T	A	A	M	L	E	G	L	A	V	L	P	L	K	R	Q	A	Y	R	G	R	H	I	S	E	F	D	L	D	A	A	L	A	R	R	P	A	L	I
Query Conservation
Alig confidence						.																		.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.																		.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	F	G	.	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	.	.	.	.	N	N	S	T	F	F	S	I	S	S	S	D	L	V	S	S	E	K	L	V	K	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	Q	L	A	R	E	N	K	P	S	I	I
Template Known Secondary structure						.	S	T	T	S													T	.	.	.	.	T	T									S	T	T	T				T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T		S
Template Predicted Secondary structure						.																		.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		171	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.					.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.																				.	.	.	.	.	220	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	D	E	L	A	H	S	N	A	P	G	S	R	H	P	K	R	W	Q	D	I	E	E	L	L	E	A	G	I	D	V	F	T	T	V	N	V	Q	H	L	E	S	L	N	D	V	V	S	G	V	T	G	I	Q	V	R	E	T	V	P	D	P	F	F	D	A	A	D	D	V	V	L	V	D	L	P	P	D	D
Query Conservation
Alig confidence										.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.
Template Sequence		F	I	D	E	I	D	S	S	.	.	.	.	.	.	.	E	A	A	R	R	I	K	T	E	F	L	V	.	.	.	.	.	.	.	.	.	Q	M	Q	G	V	G	V	D	N	D	G	I	L	V	L	G	A	T	N	I	P	W	V	L	D	S	A	I	R	R	R	F	E	K	R	I	Y	I	P	L	P	E	A	H
Template Known Secondary structure					S					.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.				T	S	S	S			T	T								S			T	T	S									S										S
Template Predicted Secondary structure										.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.
Template SS confidence
		232	.	.	.	.	.	.	.								240	.	.	.	.	.	.	.	.	.	250	.										.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		187	.	.	190	.							.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure							.	.	.	.	.	.																			.	.
Query SS confidence							.	.	.	.	.	.																			.	.
Query Sequence		L	R	Q	R	L	.	.	.	.	.	.	K	E	G	K	V	Y	I	A	G	Q	A	E	R	A	I	E	H	F	.	.	F	R	K	G	N	L	I	A	L	R	E	L	A	L	R	R	T	A	D	R	V
Query Conservation							.	.	.	.	.	.																			.	.
Alig confidence							.	.	.	.	.	.																			.	.
Template Conservation
Template Sequence		A	R	A	A	M	F	R	L	H	L	G	S	T	Q	N	S	L	T	E	A	D	F	Q	E	L	G	R	K	T	D	G	Y	S	G	A	D	I	S	I	I	V	R	D	A	L	M	Q	P	V	R	K	V
Template Known Secondary structure												T	T			B													S			S
Template Predicted Secondary structure
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions