 |
Job Description | P21865 | Confidence | 59.95% | Date | Thu Jan 5 11:38:35 GMT 2012 |
Rank | 391 | Aligned Residues | 58 |
% Identity | 14% | Template | c2r7aC_ |
PDB info |
PDB header:transport protein | Chain: C: PDB Molecule:bacterial heme binding protein; |
PDBTitle: crystal structure of a periplasmic heme binding protein2 from shigella dysenteriae
|
Resolution | 2.05 Å |
|
 |
  |   |
92 | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | |
|
|
|
140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | F | D | L | D | A | A | L | A | R | R | P | A | L | I | L | M | D | E | L | A | H | S | N | A | P | G | S | R | H | P | K | R | W | Q | D | I | E | E | L | L | E | A | G | I | D | V | F | . |
. |
. |
. |
T | T | V | N | V | Q | H | L | E | S | L | N | D | V | V | S | G | V | T | G |
Query Conservation |   |
|   |
|   |   |   |   |
|   |   |   |
|   |   |   |
|
|
|
|
|
|
|   |
|   |   |   |   |   |   |   |
|
|   |   |
|
|   |   |
|
|   |   |
|
|   |
|   | . | . | . | . |
|
|   |
|   |
|
|   |
|
|   |   |   |   |
|   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |
|   |   |
|   |
|
|
|
|
|   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
|   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |   |
|
Template Sequence |   |
Q | L | S | S | E | G | I | L | S | L | R | P | D | S | V | I | T | W | Q | D | A | G | P | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Q | I | V | L | D | Q | L | R | A | Q | K | V | N | V | V | T | L | P | R | V | P | A | T | L | E | Q | M | Y | A | N | I | R | Q | L | A | K | T | L | Q |
Template Known Secondary structure |   |
B |
|
|  |  |  |  |  | T | T |
|
| S |  |  |  |  |  | T | T |
| S |
| . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |
|
|
| S |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | |
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|