Job Description P21865 Confidence 95.56% Date Thu Jan 5 11:38:35 GMT 2012 Rank 117 Aligned Residues 119 % Identity 14% Template c2lb5A_ PDB info PDB header:transferase Chain: A: PDB Molecule:sensor histidine kinase; PDBTitle: refined structural basis for the photoconversion of a phytochrome to2 the activated far-red light-absorbing form Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		529	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.														.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Query Sequence		Q	D	I	A	A	T	S	E	Q	F	I	A	S	T	F	H	A	R	S	Q	V	L	L	P	D	D	N	G	K	L	Q	P	L	T	H	P	Q	G	M	T	P	W	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	A	I	A	Q	W	S	F	D	K	G	L	P	A	G	A	G	T	D	T	L	P	G	.
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template Conservation
Template Sequence		D	Q	I	L	R	A	T	V	E	E	V	R	A	F	L	G	T	D	R	V	K	V	Y	R	F	D	P	E	G	H	G	T	V	V	A	E	A	R	G	G	E	R	L	P	S	L	L	G	L	T	F	P	A	G	D	I	P	E	E	A	R	R	L	F	R	L	A	Q	V	R	V	I	V	D	V	E	A	Q	S	R
Template Known Secondary structure																			S									T	T	S										S	S			S				T	T					G	G	G			S									T								G	G	G
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
																																							595	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	P	Y	Q	I	L	P	L	K	S	G	E	K	T	Y	G	L	V	V	V	E	P	G	N	L	R	Q	L	M	I	P	E	Q	Q	R	L	L	E	T	F	T	L	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Conservation																																																																.
Template Sequence		S	I	S	Q	P	E	S	W	G	L	S	A	R	V	P	L	G	E	P	L	Q	R	P	V	D	P	C	H	V	H	Y	L	K	S	M	G	V	A	S	S	L	V	V	P	L	M	H	H	Q	E	L	W	G	L	L	V	S	H	H	A	E	P	.	R	P	Y	S	Q	E	E	L	Q	V	V	Q	L	L	A	D	Q
Template Known Secondary structure						S	S						S						S		S	S														T	T		S										T	T											S			.
Template Predicted Secondary structure																																																																.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		638	.	640	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	N	A	L	E	R	L	T	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	S	I	A	I	A	Q	A	E	L	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions