Job Description P21865 Confidence 88.13% Date Thu Jan 5 11:38:35 GMT 2012 Rank 197 Aligned Residues 126 % Identity 18% Template c2kjqA_ PDB info PDB header:replication Chain: A: PDB Molecule:dnaa-related protein; PDBTitle: solution structure of protein nmb1076 from neisseria meningitidis.2 northeast structural genomics consortium target mr101b. Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	D	P	D	R	L	L	E	Q	T	A	A	P	H	R	G	K	L	K	V	F	F	G	A	C	A	G	V	G	K	T	W	A	M	L	A	E	A	Q	R	L	R	A	Q	G	L	D	I	V	V	G	V	V	E	T	H	G	R	K	D	T	A	A	M	L	E	G	L	A	V	L	P	L	K	R	Q	A	Y	R	G
Query Conservation
Alig confidence																				.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	T	E	N	A	E	L	V	Y	V	L	R	H	K	H	G	Q	F	.	I	Y	V	W	G	E	E	G	A	G	K	S	H	L	L	Q	A	W	V	A	Q	A	L	E	A	G	K	N	A	A	Y	I	D	A	A	S	M	P	L	T	D	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S			T													S		.					S	S	S	T	T	T	T													T	T	T								T	T	T	S				G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																				.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.				.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																																																											.	.	.
Query SS confidence																																																											.	.	.
Query Sequence		R	H	I	S	E	F	D	L	D	A	A	L	A	R	R	P	A	L	I	L	M	D	E	L	A	H	S	N	A	P	G	S	R	H	P	K	R	W	Q	D	I	E	E	L	L	E	A	G	I	D	V	F	T	T	V	N	V	.	.	.	Q	H	L	E	S	L	N	D	V	V	S	G	V	T	G	I	Q	V	R	E
Query Conservation																																																											.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.												.	.																																.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	F	E	A	E	Y	L	A	V	D	Q	V	.	.	E	K	L	G	N	E	E	Q	A	L	L	F	S	I	F	N	R	F	R	N	S	G	K	G	F	L	L	L	G	S	E	Y	T	P	Q	Q	L	V	I	R	E	D	L	R	T	R	M	A	Y	C	L	V	Y	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	G	G		S						S	T	.	.	T				S																	T									S	S		T	T	T	S	S									G	G	G	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template SS confidence
															82	.	.	.	.	.	.	.	90	.	.			.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		165	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	K	P
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		147	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions