Job Description P21865 Confidence 55.82% Date Thu Jan 5 11:38:35 GMT 2012 Rank 431 Aligned Residues 106 % Identity 13% Template c2j4dA_ PDB info PDB header:dna-binding protein Chain: A: PDB Molecule:cryptochrome dash; PDBTitle: cryptochrome 3 from arabidopsis thaliana Resolution 1.9 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.														.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	A	R	L	A	S	R	L	G	S	V	W	H	A	V	Y	V	E	T	P	A	L	H	R	L	P	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	K	R	R	A	I	L	S	A	L	R	L	A	Q	E	L	G	A	E	T	A	T	L	S	D	P	A	E	E	K	A	V	V	R	Y	A	R	E	H
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation																																																																				.
Template Sequence		D	A	L	Y	K	A	W	S	S	S	D	T	I	L	P	V	Y	C	L	D	P	R	L	F	H	T	T	H	F	F	N	F	P	K	T	G	A	L	R	G	G	F	L	M	E	C	L	V	D	L	R	K	N	L	M	K	R	G	L	N	L	L	I	R	S	G	.	K	P	E	E	I	L	P	S	L	A	K	D	F
Template Known Secondary structure										T		S										G	G	G	G	S	B		T	T	T			B	S	S																						T	T								S	.
Template Predicted Secondary structure																																																																				.
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.	.	.
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350		.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		N	L	G	K	I	I	L	G	R	P	A	S	R	R	W	.	W	R	R	E	T	F	A	D	R	L	A	R	I	A	P	D	L	D	Q	V	L	V	A	L	D
Query Conservation																	.
Alig confidence																	.
Template Conservation
Template Sequence		G	A	R	T	V	F	A	H	K	E	T	C	S	E	E	V	D	V	E	R	L	V	N	Q	G	L	K	R	V	G	N	S	T	K	L	E	L	I	W	G	S
Template Known Secondary structure		T		S									S																T	T		S	S									S
Template Predicted Secondary structure
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions