Job Description P21865 Confidence 51.92% Date Thu Jan 5 11:38:35 GMT 2012 Rank 481 Aligned Residues 79 % Identity 18% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.						.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.
Query Sequence		H	R	G	K	L	K	V	F	F	G	A	C	A	G	V	G	K	T	W	A	M	L	A	E	A	Q	R	L	R	A	Q	G	L	D	I	V	V	G	V	V	E	T	H	G	R	K	D	T	A	A	M	L	E	.	.	.	.	.	G	L	A	V	L	P	L	K	R	Q	A	Y	R	G	R	H	I	S	E	F	D	L
Query Conservation																																																							.	.	.	.	.
Alig confidence														.																																									.	.	.	.	.										.	.	.	.	.	.	.	.	.
Template Conservation														.																																																							.	.	.	.	.	.	.	.	.
Template Sequence		T	K	G	N	V	I	M	F	V	G	L	Q	.	G	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y	Q	R	K	G	W	K	T	C	L	I	C	A	D	T	F	R	A	G	A	F	D	Q	L	K	Q	N	A	T	K	A	R	I	P	F	Y	G	S	Y	T	.	.	.	.	.	.	.	.	.	E	M	D	P
Template Known Secondary structure			S	S								S	T	.	T	S	S															T	T											S	S	S														T									.	.	.	.	.	.	.	.	.		S
Template Predicted Secondary structure														.																																																							.	.	.	.	.	.	.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.										.	.	.	.
		96	.	.	.									100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.
Query Sequence		D	A	A	L	.	.	.	.	.	.	.	.	A	R	R	P	A	L	I	L	M	D
Query Conservation						.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	I	I	A	S	E	G	V	E	K	F	K	N	E	N	F	E	I	I	I	V	D
Template Known Secondary structure															T	T
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions