Job Description P21865 Confidence 81.98% Date Thu Jan 5 11:38:35 GMT 2012 Rank 228 Aligned Residues 73 % Identity 23% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.						.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.																											.	.
Query SS confidence																																																	.	.	.	.	.																											.	.
Query Sequence		V	F	F	G	A	C	A	G	V	G	K	T	W	A	M	L	A	E	A	Q	R	L	R	A	Q	G	L	D	I	V	V	G	V	V	E	T	H	G	R	K	D	T	A	A	M	L	E	.	.	.	.	.	G	L	A	V	L	P	L	K	R	Q	A	Y	R	G	R	H	I	S	E	F	D	L	D	A	A	L	.	.
Query Conservation																																																	.	.	.	.	.																											.	.
Alig confidence						.																																											.	.	.	.	.												.	.	.	.	.	.	.	.	.							.	.
Template Conservation						.																																																											.	.	.	.	.	.	.	.	.
Template Sequence		F	L	V	G	.	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E	V	M	D	G	E	.	.	.	.	.	.	.	.	.	S	P	E	S	I	R	R	R
Template Known Secondary structure						.		T	T	S	S															T	T										S	S																T								T	T		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure						.																																																											.	.	.	.	.	.	.	.	.
Template SS confidence
		102	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.										.	.	.	.	.	.	170	.
								100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	A	R	R	P	A	L	I	L	M	D
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.
Template Conservation
Template Sequence		V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D
Template Known Secondary structure										T		S
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions