Job Description P21865 Confidence 50.58% Date Thu Jan 5 11:38:35 GMT 2012 Rank 493 Aligned Residues 193 % Identity 20% Template c1ojlF_ PDB info PDB header:response regulator Chain: F: PDB Molecule:transcriptional regulatory protein zrar; PDBTitle: crystal structure of a sigma54-activator suggests the2 mechanism for the conformational switch necessary for3 sigma54 binding Resolution 3.0 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	L	L	E	Q	T	A	A	P	H	R	G	K	L	K	V	F	F	G	A	C	A	G	V	G	K	T	W	A	M	L	A	E	A	Q	R	L	R	A	Q	G	L	D	I	V	V	G	V	V	E	T	H	G	R	K	D	T	A	A	M	L	E	G	L	A	V	L	P	L	K	R	Q	A	Y	R	G	R	H	I
Query Conservation
Alig confidence																																																.	.
Template Conservation																																																.	.
Template Sequence		Q	H	L	L	N	E	I	A	M	V	A	P	S	D	A	T	V	L	I	H	G	D	S	G	T	G	K	E	L	V	A	R	A	L	H	A	C	S	A	R	S	D	R	P	L	V	.	.	T	L	N	C	A	A	L	N	E	S	L	L	E	S	E	L	F	G	H	E	K	G	A	F	T	K	R	R	E	G	R	F
Template Known Secondary structure													S	T	T									T	T	S	S												S	S		S	S	S				.	.					T	T											T				S	S	S								T	T
Template Predicted Secondary structure																																																.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.			.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.												.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	E	F	D	L	D	A	A	L	A	R	R	P	A	L	I	L	M	D	E	L	A	H	S	N	A	P	G	S	R	H	P	K	R	W	Q	D	I	E	E	L	L	E	.	.	.	.	.	.	.	.	.	.	.	A	G	I	D	V	F	T	T	V	N	V	Q	H	L	E	S	L	N	D	V	V	S	G	V	T	G
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.
Template Sequence		V	E	A	.	.	.	.	.	.	.	.	D	G	G	T	L	F	L	D	E	I	G	D	I	S	P	.	.	.	.	.	.	.	.	.	L	M	Q	V	R	L	L	R	A	I	Q	E	R	E	V	Q	R	V	G	S	N	Q	T	I	S	V	D	V	R	L	I	A	A	T	H	R	D	L	A	E	E	V	S	A	G
Template Known Secondary structure		G	G	G	.	.	.	.	.	.	.	.	T	T	S							G	G	G				.	.	.	.	.	.	.	.	.												S	S					S	S	S															S	S									T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.
Template SS confidence
		230	.	.									.	.	.	.	.	.	.	240	.	.	.	.	.	.	.										.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.																.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	Q	V	R	E	T	V	P	D	P	F	F	D	A	A	D	D	V	V	L	V	D	L	P	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	R	Q	R	L	K	E	G	K	V	Y	I	A	G	Q	A	E	R	A	I	E	H	F	F	R	K	G	N	L	I	A	L	R	E	L	A	L	R
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.
Template Sequence		R	.	.	.	.	.	F	R	Q	D	L	Y	Y	R	L	N	V	V	A	I	E	M	P	S	L	R	Q	R	R	E	D	I	P	L	L	A	D	H	F	L	R	R	F	A	E	R	N	R	K	V	V	K	G	F	T	P	Q	A	M	D	L	L	I	H	Y	D	W	P	G	N	I	R	E	L	E	N	A	I	E	R
Template Known Secondary structure		S	.	.	.	.	.	S										S								G	G	G	G	G	G	G																T	T						B														T	T
Template Predicted Secondary structure			.	.	.	.	.
Template SS confidence
		293						.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		225	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	V	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		368	.	370

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions