Job Description P21865 Confidence 75.48% Date Thu Jan 5 11:38:35 GMT 2012 Rank 281 Aligned Residues 118 % Identity 14% Template c1nsfA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:n-ethylmaleimide sensitive factor; PDBTitle: d2 hexamerization domain of n-ethylmaleimide sensitive factor (nsf) Resolution 1.90 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.					60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure															.																																					.	.	.	.
Query SS confidence															.																																					.	.	.	.
Query Sequence		D	R	L	L	E	Q	T	A	A	P	H	R	G	.	K	L	K	V	F	F	G	A	C	A	G	V	G	K	T	W	A	M	L	A	E	A	Q	R	L	R	A	Q	G	L	D	I	V	V	G	V	.	.	.	.	V	E	T	H	G	R	K	D	T	A	A	M	L	E	G	L	A	V	L	P	L	K	R	Q	A	Y
Query Conservation															.																																					.	.	.	.
Alig confidence															.																										.	.	.									.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.																													.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	L	V	Q	Q	T	K	N	S	D	R	T	P	L	V	S	V	L	L	E	G	P	P	H	S	G	K	T	A	L	A	A	K	I	A	E	E	S	.	.	.	N	F	P	F	I	K	I	C	S	P	D	K	M	I	G	F	S	E	T	A	K	C	Q	A	M	K	K	I	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure												S	S		S									S	T	T	S	S													.	.	.			S							G	G	G	S	T	T														.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																									.	.	.																													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		522	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560				.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.											.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.
Query Sequence		R	G	R	H	I	S	E	F	D	L	D	A	A	L	A	R	R	P	A	L	I	L	M	D	E	L	A	H	S	N	A	P	G	S	R	H	P	K	R	W	Q	D	I	E	E	L	L	E	A	G	I	D	.	.	.	.	.	.	.	.	.	.	V	F	T	T	V	N	V	Q	H	L	E	S	L	N	D
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.							.	.
Template Conservation		.	.	.	.	.	.	.	.	.																																																												.	.
Template Sequence		.	.	.	.	.	.	.	.	.	F	D	D	A	Y	K	S	Q	L	S	C	V	V	V	D	D	I	E	R	L	L	D	Y	V	P	I	G	P	R	F	S	N	L	V	L	Q	A	L	L	V	L	L	K	K	A	P	P	Q	G	R	K	L	L	I	I	G	T	T	S	.	.	R	K	D	V	L	Q	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.						T	S	S													T	T		B	T	T	T	T	B													T	T				S	T	T										S	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																																												.	.
Template SS confidence
											589	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.			.	.	650	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions