Job Description P30871 Confidence 98.35% Date Thu Jan 5 11:46:46 GMT 2012 Rank 11 Aligned Residues 186 % Identity 17% Template c3g3oA_ PDB info PDB header:biosynthetic protein Chain: A: PDB Molecule:vacuolar transporter chaperone 2; PDBTitle: crystal structure of the cytoplasmic tunnel domain in yeast2 vtc2p Resolution 2.10 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50								.	.	.	.	.	.	.	.	.	60	.	.						.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.													.	.	.	.	.													.
Query SS confidence																																													.	.	.	.	.	.	.													.	.	.	.	.													.
Query Sequence		K	F	I	V	N	H	S	A	V	E	A	L	R	D	H	L	N	T	L	G	G	E	H	H	D	P	V	Q	L	L	N	I	Y	Y	E	T	P	D	N	W	L	R	G	.	.	.	.	.	.	.	H	D	M	G	L	R	I	R	G	E	N	G	.	.	.	.	.	R	Y	E	M	T	M	K	V	A	G	R	V	.
Query Conservation																																													.	.	.	.	.	.	.													.	.	.	.	.													.
Alig confidence																											.																		.	.	.	.	.	.	.													.	.	.	.	.													.
Template Conservation																											.
Template Sequence		K	F	W	V	H	N	D	N	L	X	E	V	K	T	R	I	L	R	H	L	P	V	L	V	D	.	P	L	I	N	T	L	Y	F	D	N	E	H	F	E	L	Y	N	D	K	L	L	K	L	N	S	A	P	T	L	R	L	R	W	T	G	Q	L	S	D	K	P	D	I	F	L	E	K	K	T	L	I	S	E	F
Template Known Secondary structure																			T	T	S		B				.											T	T										T		T	T										S		G	G	G
Template Predicted Secondary structure																											.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
													75	.	.	.	.	80	.	.	.	.	.	.	.								.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	T	G	G	L	H	Q	R	P	E	Y	N	V	A	.	.	.	.	.	.	.	L	S	E	P	T	L	D	L	A	Q	L	P	T	E	V	W	P	N	G	E	L	P	A	D	L	A	S	R	V	Q	P	L	F	S	T	D	F	Y	R	E	K	W	L	V	A	V	D	G	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	L	T	K	L	Q	L	K	Q	K	F	I	N	G	F	I	F	E	G	D	K	K	F	K	E	Q	T	L	K	K	L	K	E	S	G	T	A	G	R	D	L	E	R	L	E	E	D	F	S	E	I	Q	N	F	I	I	K	N	E	L	Q	P	V	F	R	T	V	Y	T	R	T	A	F	Q	I	P	G	D	D	K
Template Known Secondary structure										G	G	G							S																	T																							T	T																	T	T			S
Template Predicted Secondary structure
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.											.	.																											.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	I	E	I	A	L	D	Q	G	E	V	K	A	G	E	F	A	E	P	.	.	.	.	.	.	.	.	.	.	I	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	E	L	E	L	L	S	G	D	T	R	A	V	L	K	L	A	N	Q	L	V	S
Query Conservation																					.	.	.	.	.	.	.	.	.	.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																			.	.	.	.	.	.	.	.	.	.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.
Template Conservation		.																																																																						.	.	.
Template Sequence		.	I	R	V	T	I	D	S	N	I	V	F	I	K	E	D	S	F	D	R	E	R	P	I	R	D	P	N	T	W	H	R	T	D	I	D	A	N	V	A	N	P	L	K	F	L	R	G	G	E	Y	A	K	F	P	Y	S	V	X	E	I	K	V	K	S	X	I	H	G	Q	.	.	.	W	L	N	D	L	T	N
Template Known Secondary structure		.																		S	S	S	S		S	S		T	T	S	S	S		S	S	T	T	S	S	S	S		T	T	T	T			G	G	G						S															.	.	.							T
Template Predicted Secondary structure		.																																																																						.	.	.
Template SS confidence
			417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.				.	.	.	.	490	.	.
		181	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		Q	T	G	L	R	Q	G	.	S	L	S	K	A	A	R	G	Y	H	L
Query Conservation									.
Alig confidence									.
Template Conservation
Template Sequence		S	H	L	V	K	E	I	P	K	F	S	I	F	V	Q	G	V	A	S
Template Known Secondary structure		S	T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		511	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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