Job Description P0ABJ6 Confidence 5.43% Date Thu Jan 5 11:15:38 GMT 2012 Rank 14 Aligned Residues 81 % Identity 15% Template c3eamB_ PDB info PDB header:membrane protein, transport protein Chain: B: PDB Molecule:glr4197 protein; PDBTitle: an open-pore structure of a bacterial pentameric ligand-2 gated ion channel Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.									.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.		.	.	.	90
Predicted Secondary structure																										.	.	.	.	.	.	.	.																																												.
Query SS confidence																										.	.	.	.	.	.	.	.																																												.
Query Sequence		T	G	F	I	L	S	I	I	L	T	V	I	P	F	W	M	V	M	T	G	A	A	S	P	.	.	.	.	.	.	.	.	A	V	I	L	G	T	I	L	A	M	A	V	V	Q	V	L	V	H	L	V	C	F	L	H	M	N	T	K	S	D	E	G	W	N	M	T	A	F	V	F	T	V	L	.	I	I	A	I
Query Conservation																										.	.	.	.	.	.	.	.																																												.
Alig confidence																										.	.	.	.	.	.	.	.																																												.
Template Conservation
Template Sequence		V	T	L	V	V	S	T	L	I	A	H	I	A	F	N	I	L	V	E	T	N	L	P	K	T	P	Y	M	T	Y	T	G	A	I	I	F	M	I	Y	L	F	Y	F	V	A	V	I	E	V	T	V	Q	H	Y	L	K	V	E	S	Q	P	A	R	A	A	S	I	T	R	A	S	R	I	A	F	P	V	V	F	L
Template Known Secondary structure																						T	S				S	S																															T	T
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		91	.	.	.	.	.	.	.	.	100
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	V	G	S	I	W	I	M	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	N	I	I	L	A	F	L	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		305	.	.	.	.	310	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions