Job Description P46022 Confidence 98.51% Date Thu Jan 5 12:03:55 GMT 2012 Rank 8 Aligned Residues 172 % Identity 7% Template c2wadB_ PDB info PDB header:peptide binding protein Chain: B: PDB Molecule:penicillin-binding protein 2b; PDBTitle: penicillin-binding protein 2b (pbp-2b) from streptococcus2 pneumoniae (strain 5204) Resolution 2.18 Å

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		51	.	.	.	.	.	.	.	.	60	.						.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.														.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure													.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	A	W	L	H	G	N	F	R	Y	V	.	.	.	.	.	A	H	S	D	W	V	S	M	D	Q	I	S	P	W	M	G	L	A	V	I	A	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Q	K	F	P	E	H	W	G	F	D	V	A	S	I	E	K	A	L	A	H	N	E	R	N	E	N	R
Query Conservation													.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	E	I	Y	D	A	S	G	K	P	L	V	E	N	T	L	K	Q	V	V	S	F	T	R	S	N	K	M	T	A	T	D	L	K	E	I	A	K	K	L	L	T	Y	V	S	I	S	S	P	N	L	T	E	R	Q	L	A	D	Y	Y	L	A	D	P	E	I	Y	K	K	T	V	E	A	L	P	S	E	S	E	L
Template Known Secondary structure							T	T	S		B	S															T	T															T	T																			T	S									S	S	S					S
Template Predicted Secondary structure
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.						.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.
Query SS confidence																					.	.	.	.	.
Query Sequence		I	R	G	A	S	T	I	S	Q	Q	T	A	K	N	L	F	L	W	D	.	.	.	.	.	G	R	S	W	V	R	K	G	L	E	A	G	L	T	L	G	I	E	T	V	W	S	K	K	R	I	L	T	V	Y	L	N	I	A	E	F	G	D	G	V	F	G	V	E	A	A	A	Q	R	Y	F	H	K	P	A	S
Query Conservation																					.	.	.	.	.
Alig confidence																					.	.	.	.	.																																					.																			.
Template Conservation																																																														.																			.
Template Sequence		Y	N	N	A	V	D	S	V	P	T	S	Q	L	N	Y	T	E	D	E	K	K	E	I	Y	L	F	S	Q	L	N	A	V	G	N	F	A	T	G	T	I	A	T	D	P	L	N	D	S	Q	V	A	V	I	A	S	I	S	K	E	M	.	P	G	I	S	I	S	T	S	W	D	R	K	I	L	E	T	S	L	.
Template Known Secondary structure								T	S	S		S						T	T													T	S		T	T								S				T	T									G	G	G	S	.	T	T													S	S	T	T	.
Template Predicted Secondary structure																																																														.																			.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	T	R	S	E	A	A	L	L	A	A	V	L	P	N	P	L	R	F	K	V	S	S	P	S	G	Y	V	R	S	R	Q	A	W	I	L	R	Q	M	Y	Q	L	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	S	S	I	V	G	S	V	S	S	E	K	A	G	L	P	A	E	E	A	E	S	Y	L	K	K	G	Y	S	L	N	D	R	V	G	T	S	Y
Template Known Secondary structure		.	.	.	.	.	.	.							B			T	T	T		S		G	G	G								T			S	S				B		S
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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