Return to main results Retrieve Phyre Job Id

Job DescriptionP46022
Confidence90.70%DateThu Jan 5 12:03:55 GMT 2012
Rank9Aligned Residues78
% Identity13%Templatec1pmdA_
PDB info PDB header:peptidoglycan synthesisChain: A: PDB Molecule:peptidoglycan synthesis multifunctional enzyme; PDBTitle: penicillin-binding protein 2x (pbp-2x)
Resolution3.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   131........140.........150.........160.........170.........180.........190.........200.........210
Predicted Secondary structure 






























Query SS confidence 















































































Query Sequence  DGRSWVRKGLEAGLTLGIETVWSKKRILTVYLNIAEFGDGVFGVEAAAQRYFHKPASKLTRSEAALLAAVLPNPLRFKVS
Query Conservation    

  

  
   
  

   

 



 


 
  
    

 


  



    

  


 

 
   
  
 
 
Alig confidence 






























































....












Template Conservation          
  

  
          
                
                
 
....
       
 

 
Template Sequence  EKTQFNKVAEVFHKYLDMEESYVREQLSQPNLKQVSFGAKGNGITYANMMSIKKELEAAEVKG. . . . IDFTTSPNRSYPN
Template Known Secondary structure 
STTTTTTT


SS

SB




SSSSSB
TTTTTTSSTTS


....




B
SS
Template Predicted Secondary structure 






















....





Template SS confidence 















































































   115....120.........130.........140.........150.........160.........170....... ..180.........190
 
   211.
Predicted Secondary structure 

Query SS confidence 

Query Sequence  SP
Query Conservation    
Alig confidence 

Template Conservation    
Template Sequence  GQ
Template Known Secondary structure  SS
Template Predicted Secondary structure 
Template SS confidence 

   191.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions