Job Description P31437 Confidence 7.95% Date Thu Jan 5 11:47:28 GMT 2012 Rank 24 Aligned Residues 181 % Identity 12% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

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		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	T	I	I	V	A	W	F	S	L	V	R	K	S	R	P	G	I	L	V	F	C	A	I	L	T	S	L	V	G	T	F	L	L	V	T	H	G	N	P	T	S	L	S	I	S	P	A	A	L	F	W	G	I	A	S	A	F	A	A	A	F	Y	T	T	Y	P	S	T	L	I	A	R	Y	G	T	L	P	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	P	F	V	G	X	F	L	A	R	I	S	R	G	R	S	I	R	E	F	I	L	G	V	L	L	V	P	A	G	V	S	T	V	W	F	S	I	F	G	G	T	A	I	V	F	E	Q	N	G	E	S	I	W	G	D	G	A	A	E	E	Q	L	F	G	L	L	H	A	L	P	G	G	Q	I	X	G	I	I	A
Template Known Secondary structure													T	T	T																																				T						T	T		S										T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
		189	190	.	.	.	.	.							.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.				.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.																																										.	.	.
Query SS confidence									.	.	.	.	.	.																																										.	.	.
Query Sequence		V	G	W	S	M	L	I	.	.	.	.	.	.	G	G	L	I	L	L	P	F	Y	A	R	Q	G	T	N	F	V	V	N	G	S	L	I	L	A	F	F	Y	L	V	V	I	G	T	S	L	T	F	S	L	Y	.	.	.	L	K	G	A	Q	L	I	G	G	P	K	A	S	I	L	S	C	A	E	P	L	S	S
Query Conservation									.	.	.	.	.	.																																										.	.	.
Alig confidence									.	.	.	.	.	.																																										.	.	.
Template Conservation
Template Sequence		X	I	L	L	G	T	F	F	I	T	S	A	D	S	A	S	T	V	X	G	T	X	S	Q	H	G	Q	L	E	A	N	K	W	V	T	A	A	W	G	V	A	T	A	A	I	G	L	T	L	L	L	S	G	G	D	N	A	L	S	N	L	Q	N	V	T	I	V	A	A	T	P	F	L	F	V	V	I	G	L	X
Template Known Secondary structure																								T	T	T	T		S	S																									G	G	G
Template Predicted Secondary structure
Template SS confidence
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	L	S	L	L	L	L	G	I	T	F	T	L	P	D	W	L	G	T	L	L	I	L	S	S	V	I	L	I	S	M	D	S	R	R	R	A	R	K	I	N	R	P	A	R	H	K
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	A	L	V	K	D	L	S	N	D	V	I	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	Y	R	E	Q	Q	R	F	N	A	R	L	A	R	E	R
Template Known Secondary structure										T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		538	.	540	.	.	.	.	.	.	.	.	.	550																			.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions